BAC Information

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BAC

Clone NameMSMg01-121A15
Chromosome4 (Build37)
Map Location 45,466,026 - 45,466,215
singlet/doubletsinglet
Overlap geneShb
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1
Downstream geneLOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121A15.T7 (MSMg01no121_a15.b1)MSMg01-121A15.TJ (MSMg01no121_a15.g1)
ACCAG331257AG331258
length673632
length of high quality
(start - end)
157 (51 - 207)188 (28 - 215)
definitionCHROMAT_FILE: MSMg01no121_a15.b1 PHD_FILE: MSMg01no121_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:41 2005CHROMAT_FILE: MSMg01no121_a15.g1 PHD_FILE: MSMg01no121_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCGGTATTCAACAAGAGCCGCGGAATTCTGGGATTGCAAAACTACGCNG
AGAAACCCTCTCTCAAACAAAAACGAAAACAAAAAAATAAAAAAAGAAAG
AAAAGGAGAGAGAATGAAGTATAAAAGGTTCAGGTTATTTAACCCAGTGA
TCCACTTCCTTCAGTGGCTCCTCTCCTTTGGATTCCACAACCTTCTGGAA
CAAGCACCATCAACCTCGGACCAGATATCTCAATGCGAGAGCATAGGGAA
AGAGGCGTGGCTCACATTCAAACCACTGAGGGGGGAGGGGCAGTTTTTAG
TATTTCTGGAGCCCCTTAGTTTAGTCTCTGAGGTTTTTTCAGAGCCCCCC
CCCCCCAATATTGNCCTATGCAGGAAAATATCAGTAAAACCTTTGTGAGT
ATAATGGTAAAATATCAAACATAGTGGGAAAAAGAGAAAAGGCAAAAAGG
AAAAGAATTCATAAAAGGGACGAATGGAAAGATCAAAAGAAAAAAAAGTG
AGGGGCTAAGGATTTATATTAAAAGAGGGGGAAAGGGAAAAAACGCAGGC
TCAAAAAAGAGTGCTTGCAATCACGGAAAATCTGAGTTAAACAGCACGCG
ACAGGATGAACATTTTGCCGGAAATACAAGAACGGATAAAGTAAATAATT
GGGATGAATGGACAAGGGGAAAA
AGCCTATGAAGTTCAAAAAAAGGCCCACAGGAAAAGAAACGTTTGCAGAG
GCCCCTCTAGAGCACGTAATGGAGCTGGTGCTTTCGGTTTCTTAAGACTA
ATAAATGAACTCATTAATATGTCAGACAGAAAAACCAACCAGAGAAACCT
GTCCCTCAATAATATCTAGCCAAAGGAGAGAGAGGTCCCTACAGCTCTAA
TCCTGCCCCCACACTTCCTTTGGTAGACCTGCATGTTAAACATTAATTAC
GGCTGTTACTCATTATTCTCTTAGAGCTTCCCCTACAAACACAATTGTTA
ATTTTTTTTCTGGCCCCCCACCCCCCGGGAGGTCATGAATGAGACAGGAG
GTATTCTGGAGGTCTAGAGAGACTGTTGAAAGGCAGAACAGGGATGGAGT
ACCAAGAGAGCTATGAACAGGATTAAGACTCCCTGAGGGACCCTCTGCAG
ACTCTGGGCCCCCAAAGAGGTTTGTGGAGCTGGAAGTGTGAGGCATGACC
GGAGAACGCAGCGACGGAAAACTAGGTTAAAAATGGCACGCGGTTGCGGC
GGGCAATGACCAAATCAAAGATAAGGTCTAAGAGTATATGGAGCGGTTGC
TTCCACTTTATGGATGTCCAGAGCTACCCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_a15.g1 MSMg01no121_a15.g1 CHROMAT_FILE:
MSMg01no121_a15.g1 PHD_FILE: MSMg01no121_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:41 2005
         (188 letters)



>mm_chr4_45465826_45466415
          Length = 590

 Score =  321 bits (166), Expect = 2e-92
 Identities = 184/190 (96%), Gaps = 2/190 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaaaagaa-acgtttgcagaggcccctctag-agcacgtaatggagctggtgctttc 58
           ||||||||||| |||||||||||| ||| ||||  |||||||||||||||||||||||||
Sbjct: 201 caggaaaagaagacgtttgcagagacccttctaacagcacgtaatggagctggtgctttc 260

                                                                       
Query: 59  ggtttcttaagactaataaatgaactcattaatatgtcagacagaaaaaccaaccagaga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttcttaagactaataaatgaactcattaatatgtcagacagaaaaaccaaccagaga 320

                                                                       
Query: 119 aacctgtccctcaataatatctagccaaaggagagagaggtccctacagctctaatcctg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aacctgtccctcaataatatctagccaaaggagagagaggtccctacagctctaaccctg 380

                     
Query: 179 cccccacact 188
           ||||||||||
Sbjct: 381 cccccacact 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 590
Length adjustment: 8
Effective length of query: 180
Effective length of database: 582
Effective search space:   104760
Effective search space used:   104760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)