BAC Information

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BAC

Clone NameMSMg01-121B20
Chromosome4 (Build37)
Map Location 137,161,666 - 137,286,038
singlet/doubletdoublet
Overlap geneUsp48, Rap1gap
Upstream geneLOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2
Downstream geneAkp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121B20.T7 (MSMg01no121_b20.b1)MSMg01-121B20.TJ (MSMg01no121_b20.g1)
ACCAG331312AG331313
length711731
length of high quality
(start - end)
240 (50 - 289)488 (69 - 556)
definitionCHROMAT_FILE: MSMg01no121_b20.b1 PHD_FILE: MSMg01no121_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:47 2005CHROMAT_FILE: MSMg01no121_b20.g1 PHD_FILE: MSMg01no121_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,161,666 - 137,161,901)(137,285,551 - 137,286,038)
sequence
NCCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTTGTCCCCTTGACTAACCTGGGAGCCACCTGCTACGTCA
ACACCTTTCTCCAGGTGTGGTTCCTCAACTTGGAGCTTCGGCAGGCGCTG
TACTTATGCCCCAGCACCTGCAGTGATTACACGAAGGGAGATGGGATCCA
TGGGGGAAAAGGTATGTGAGGGAACGGGGCACAGGGGCTTCCTCCTGAGG
GGGTTGCCAGCCAGTTCTCTTATGAGCCTGCTACAAAGCATGAAATAGGA
GCGTTGGTTCATGCCAAGGTCTATGCTGGAAACATACTGGGATTCCAAAA
TACATCATTTTTTTTTGCCCCCCCCCCCCCCCCATTATTCTTCTCTAGTG
AAAGGCCATTGCCTGTCCTCCCCCAAAAAAAATATTTTTTTTTTTTCTTT
TTTTGGTTTTTCGAGACAGGGTTTCTCTGTGCATTCCTGTTTGCCCTGCA
ACTCTCTCTGCACACCATGTTGCCCTTCCCCCCATTATTCTTTCCTGCTT
CTGCTTTCCCTTTTGCTTTTTTCAAAGTTGTGCGTTCCTCCCTTTTGTGC
TCCTCCTCACCCTTTTTTTCCTTTTCTTTCCATCGTTCCTTTTCCCCTTT
CTCTTTCTATCACCTCGCCCCCCCTCCTCCTTTTTCCTCTCTCCTTGTCT
CCCGTCTCGCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCACCACCAAGCTAAGGAGAGATGGTGCCAG
GGCAGACTTCAAAACCACACTTTCTCCATAGGGAAGGACACATGGCAGGT
ATGGGGTCGGAGAGTGGGGCCATGAAGAGGAGGCCTCAGCTGGTGTTCAC
AGACCCTGTGACCTGCTGGCCTTGGAGGCACCCTGGCCTCGGCAGCACCA
AAGGGGACAGGTATATTCTGTCCACCTTGGGTCCTCGTGTGTCTAGGCAG
GGTTTACACAAAGCTGTTCTTAACTCCGGGTACAATAGCGATAAATAGAA
TTTATTTTGTACAACCCTTACTGACATACATGTGGCCACAGGGCTTCCAA
AGTGGGTGTTGGGGCTGGAAGTCTCGCCTTGGGCGTGGCTCCTAAGAGTG
AACAGACACACACAAGGACATGGCTCACAGCAGCTATGCCTGGCAGCCCC
CTCCACGGCAATGGTGGGCAGGGGATGGCGAGGTCTGGACTCCAGACCAG
CTGAGACCCCCTCAGCCCAGTGTTCCCAGGAGTGTGGGGTGGCAGGGTTA
AGCTGGGTGCTGGGTGAGGAGCCAGGGATGACCCTATCCACAACCAAGGA
TACTGGGCCCTTCGTGTGCAGACAGTGAACGGACGTTGGCAGCTCCGTGG
CAAAGCCCGGCGACTCCCGCCGGCTGATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_b20.b1 MSMg01no121_b20.b1 CHROMAT_FILE:
MSMg01no121_b20.b1 PHD_FILE: MSMg01no121_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:47 2005
         (240 letters)



>mm_chr4_137161462_137162101
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttgtccccttgactaacctgggagccacctgctacgtcaacacctttctcca 64
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgtgggcttgactaacctgggagccacctgctacgtcaacacctttctcca 264

                                                                       
Query: 65  ggtgtggttcctcaacttggagcttcggcaggcgctgtacttatgccccagcacctgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgtggttcctcaacttggagcttcggcaggcgctgtacttatgccccagcacctgcag 324

                                                                       
Query: 125 tgattacacgaagggagatgggatccatgggggaaaaggtatgtgagggaacggggcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattacacgaagggagatgggatccatgggggaaaaggtatgtgagggaacggggcaca 384

                                                                   
Query: 185 ggggcttcctcctgagggggttgccagccagttctcttatgagcctgctacaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggcttcctcctgagggggttgccagccagttctcttatgagcctgctacaaagc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_b20.g1 MSMg01no121_b20.g1 CHROMAT_FILE:
MSMg01no121_b20.g1 PHD_FILE: MSMg01no121_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:47 2005
         (488 letters)



>mm_chr4_137285351_137286238
          Length = 888

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccaccaagctaaggagagatggtgccagggcagacttcaaaaccacactttctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctcaccaccaagctaaggagagatggtgccagggcagacttcaaaaccacactttctcca 629

                                                                       
Query: 61  tagggaaggacacatggcaggtatggggtcggagagtggggccatgaagaggaggcctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagggaaggacacatggcaggtatggggtcggagagtggggccatgaagaggaggcctca 569

                                                                       
Query: 121 gctggtgttcacagaccctgtgacctgctggccttggaggcaccctggcctcggcagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gctggtgttcacagaccctgtgacctgctggccttggaggcaccctggcctcggcagcac 509

                                                                       
Query: 181 caaaggggacaggtatattctgtccaccttgggtcctcgtgtgtctaggcagggtttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caaaggggacaggtatattctgtccaccttgggtcctcgtgtgtctaggcagggtttaca 449

                                                                       
Query: 241 caaagctgttcttaactccgggtacaatagcgataaatagaatttattttgtacaaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 caaagctgttcttaactccgggtacaatagcgataaatagaatttattttgtacaaccct 389

                                                                       
Query: 301 tactgacatacatgtggccacagggcttccaaagtgggtgttggggctggaagtctcgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tactgacatacatgtggccacagggcttccaaagtgggtgttggggctggaagtctcgcc 329

                                                                       
Query: 361 ttgggcgtggctcctaagagtgaacagacacacacaaggacatggctcacagcagctatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgggcgtggctcctaagagtgaacagacacacacaaggacatggctcacagcagctatg 269

                                                                       
Query: 421 cctggcagccccctccacggcaatggtgggcaggggatggcgaggtctggactccagacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cctggcagccccctccacggcaatggtgggcaggggatggcgaggtctggactccagacc 209

                   
Query: 481 agctgaga 488
           ||||||||
Sbjct: 208 agctgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)