BAC Information

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BAC

Clone NameMSMg01-121E19
Chromosome4 (Build37)
Map Location 63,782,386 - 63,782,674
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E19.T7 (MSMg01no121_e19.b1)MSMg01-121E19.TJ (MSMg01no121_e19.g1)
ACCAG331447AG331448
length690695
length of high quality
(start - end)
292 (67 - 358)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no121_e19.b1 PHD_FILE: MSMg01no121_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:02 2005CHROMAT_FILE: MSMg01no121_e19.g1 PHD_FILE: MSMg01no121_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTCTTACTTGAACACTATCAATATGTCCTTCCTAATTACTCATATA
ACTCAGTCTGCTGTAGCATGTATGGAGACTGAACATCGGGGAGAAGATGA
TCAAGCAAGAGTCCCCTTCCAGACTGACCATCACATTGTGACACAACTAA
TGAGAGAGGTTTTAGAAGATGCTGACTTAATCTAGAGTTCCAGTTCTACC
AAGAAGGCACTGGAGGAAGAAAGAGTTACACACGGGGTCAGTTAAGATGT
CTCAACACTTCCAAGGTTAGAGAGAGAGAGGATGCACAATTTCTGGTTCT
AGGAATACTGTCATTTCCACCTTTGTACCAATAGTGGTACTGCCTTTAGG
TTGTCAATTTCAAGGAGAAATCCAGCTTTCTTACTTTTTCATGCCAGAGC
ATTATATATCCCTAGCCTCCAAGGAATCTGCTGAGGCTGTTACCAGGCAC
TCAGACTCCCTACTTAGGGTTGAAGGCAAACAATATGGTCAATTCTAAAG
ACAAATTATGAAGCTGATATTAGAAGTCTTCTACTCCAGAGTTTACAATG
ACTATTCATCTGATAGATGGTATGTACTATGAAGTACGCTATAACAGCTC
GTAACTACTCCTATTAATATATATTTGTTTATGTGCATGG
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGTTTTCTCCAGAAAAACTGC
CATAAATTATATATATATATATATATATATATATACACACACACACACAC
ATACACACATACACACATACACACACATACATATGTTTGTGTCTGTATGT
GTTGGTATCTGAGTGGGATCATTTGTGTGCATATACTCACACACAAGCAC
ATGTGTGTGATGGAGGCAAGAGTGAAACCACAAGTACCAATCCTCTAGAG
CACCTCCCACCATTTAAAATTTTTTTTCAGAAATAGGATCTCTCACTGGA
TTCTTACCTTTATTGTCCACCCCCCCCCCCCCAGGGATTACTGTCTCCAT
CATCTCTACCCCTACCATGCCATATCACTTTCTCATGAAGATTATGGAGA
TCAGTCTCAATCCTTTCTACTATCATGATTTATTTGAAAAAAAAATAAAT
AAAAAGAAATATACGAACATATCTTTCTTAACTGTTAAAAACGTTAATAT
TATTTTTTCCCCTTAAGAATACCTTTATATCCACAGGGAAATTGAGCTAA
CACGGCACACTCTCATATTTGATGATCTTTCACTGATCACTCTAATGTAT
TCCACTGACACATAACCACCTTTTAAATCAATATCAATGCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e19.b1 MSMg01no121_e19.b1 CHROMAT_FILE:
MSMg01no121_e19.b1 PHD_FILE: MSMg01no121_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:02 2005
         (292 letters)



>mm_chr4_63782186_63782877
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatcaatatgtccttcctaattactcatataactcagtctgctgtagcatgtatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cactatcaatatgtccttcctaattactcatataactcagtctgctgtagcatgtatgga 430

                                                                       
Query: 61  gactgaacatcggggagaagatgatcaagcaagagtccccttccagactgaccatcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gactgaacatcggggagaagatgatcaagcaagagtccccttccagactgaccatcacat 370

                                                                       
Query: 121 tgtgacacaactaatgagagaggttttagaagatgctgacttaatctagagttccagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgacacaactaatgagagaggttttagaagatgctgacttaatctagagttccagttc 310

                                                                       
Query: 181 taccaagaaggcactggaggaagaaagagttacacacggggtcagttaagatgtctcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taccaagaaggcactggaggaagaaagagttacacacggggtcagttaagatgtctcaac 250

                                                            
Query: 241 acttccaaggttagagagagagaggatgcacaatttctggttctaggaa 289
           ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 actgccaaggttagagagagagaggatgcacaatttctggttctaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)