BAC Information

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BAC

Clone NameMSMg01-121K01
Chromosome4 (Build37)
Map Location 103,224,631 - 103,225,016
singlet/doubletsinglet
Overlap genenone
Upstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451
Downstream geneLOC100039940, EG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121K01.T7 (MSMg01no121_k01.b1)MSMg01-121K01.TJ (MSMg01no121_k01.g1)
ACCAG331692AG331693
length761733
length of high quality
(start - end)
387 (128 - 514)---
definitionCHROMAT_FILE: MSMg01no121_k01.b1 PHD_FILE: MSMg01no121_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:28 2005CHROMAT_FILE: MSMg01no121_k01.g1 PHD_FILE: MSMg01no121_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAAANAAAAAAACCCCCGCACGACGATACGGTCGATTCCCCGACGA
CCCNAGAATCTAAATTTGCGGCGCTAATAGACTCCTACTTCGTACGGGGG
GCGGAATTCTCAATGTTTCTAGAAAAAGCTTAAAAATTAAGACCAAGGAG
CTCAAGAAACAGGCTCGGGGAGAGGGGATCTGTCAAAAGACTACAGAAGC
ATCCACAAGCCATTGCCTGATCCACTGCCATCCTCTCTGGGAACAATACT
CACAAGACTGATTGCATATGAATATTGACACATATACTTGCTTAGGATAA
CATTATATCAGATCTTTACGATCCCTACCAGGAAACAAACTTCAAGTGTC
TCTGAGATGAAACTCTTTTTTTCTTTATCCCTTTCCACCTTCTTCAGCTT
ATTTCTAGTCTTTCCCACCCATACCACACTTACTCATTCATTCCCCCAAC
TACAGCCTCCTAACGGCAACCTTATATGTTGATCACAGAGCTGATGCCTA
TAAAAGCTTGCAATACAAAGGAAGGGCTAGATGTTTGAGGTTTTTCCCTT
TTCAGGCACACTTGACAGATCGTGATCCCCTAGAAACTTCCATTAACTCC
TAATGAGTAGCTCTTGGCCTTCTTAAGTGGTAAGATGTGCATGCTTTGGT
GGACCACATCCTAAATGATCTTGGAACCCTCCCACAGATTGTCAGTTAAA
ATCGGGGATCAGGACCAACTGTCCTGTTCGCTTAACCCCTGGCAGGCGGA
CTTTGACGAAA
AAAAAAAAAAAATAAAAAAAAGAAAAAAACGGCTAAGCTCCTTGCGACTA
NCACGAGATATGAGAGGCGGANGANGTCTGGTTCCCACCGCNGNGANNNN
NNNNGGNTGCNGACGAGAGGGNNNGNNNGNNGNNNNGNNGGNNNNNNNGN
GGGATGGCTCGGGGGAGGCGCNNNGGCGNGGGGAAGGGAGGNCGGGGGGC
GGAGCGGGGNGGGGGGGGNGGGNGGGGGGGCCGGAGGAAGAAGGGGGGCA
GAGGAGAGCGAAAAGCCCGACAGACAGGGCATTTTTGTTGTTGCTTGTCG
GAGAGTACAACGGTAAGGCTCTTAAAAGCCAAGGCAGGGGGACAATTTTG
TGGTTTTAAAACAACNGAAAGGGGGAAAAAGGGAATTTTTTTTCCGGGCC
ACGCGTAGGATGAAGAAGATAGATGGTTCCTGTGGGGTCTATTAACGAAA
AAAAAAAAAAAAAGGGTGGGGGGGGTAGGATTCCCGGCCCATATAGTGGG
TAAAAGCGGGGTCGCGGGGAAAGTATTTTTTCGGGCCCTTGAAACGGCCC
GCGCGTGTTGGAATATTAAAAATGCCAAATAAACGGGTGAAGAAATGGAG
CGAGCGATGCATAAGAAAAGAAAAAGTGTACGGGGGGTGCGGGGGGGAAT
ATAAAGTGGTAAATGTGGAGTGGGCAAAAAAACCAATGGGTTTTTTTTTT
TCGGGCTTAGGGAGAACTACGAGGGGCGGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_k01.b1 MSMg01no121_k01.b1 CHROMAT_FILE:
MSMg01no121_k01.b1 PHD_FILE: MSMg01no121_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:28 2005
         (387 letters)



>mm_chr4_103224431_103225216
          Length = 786

 Score =  694 bits (359), Expect = 0.0
 Identities = 380/387 (98%), Gaps = 1/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttaaaaattaagaccaaggagctcaagaaacaggctcggggagaggggatctgtcaaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttaaaaattaagaccgaggagctcaagaaacaggctcggggagaggggatctgtcaaa 260

                                                                       
Query: 61  agactacagaagcatccacaagccattgcctgatccactgccatcctctctgggaacaat 120
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 agactaaagaagcatccacaagccattgcctaatccactgccatcctctctgggaacaat 320

                                                                       
Query: 121 actcacaagactgattgcatatgaatattgacacatatacttgcttaggataacattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcacaagactgattgcatatgaatattgacacatatacttgcttaggataacattata 380

                                                                       
Query: 181 tcagatctttacgatccctaccaggaaacaaacttcaagtgtctctgagatgaaactctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatctttacgatccctaccaggaaacaaacttcaagtgtctctgagatgaaactctt 440

                                                                       
Query: 241 tttttctttatccctttccaccttcttcagcttatttctagtctttcccacccataccac 300
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 441 tttttctttatccctttccaccttcttcagctcagttctagtctttcccacccataccac 500

                                                                       
Query: 301 acttactcattcattcccccaactacagcctcctaacggcaaccttatatgttgatcaca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 acttactcattcattcccccaactacagcctcctaacggcaaccttatatgttg-tcaca 559

                                      
Query: 361 gagctgatgcctataaaagcttgcaat 387
           ||||||||||| |||||||||||||||
Sbjct: 560 gagctgatgcccataaaagcttgcaat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)