BAC Information

Click to search

BAC

Clone NameMSMg01-121N11
Chromosome4 (Build37)
Map Location 101,549,886 - 101,690,886
singlet/doubletdoublet
Overlap geneC130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536
Upstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362
Downstream geneLOC433739, Pde4b, Sgip1, Tctex1d1, Insl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121N11.T7 (MSMg01no121_n11.b1)MSMg01-121N11.TJ (MSMg01no121_n11.g1)
ACCAG331851AG331852
length696696
length of high quality
(start - end)
201 (160 - 360)279 (69 - 347)
definitionCHROMAT_FILE: MSMg01no121_n11.b1 PHD_FILE: MSMg01no121_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:45 2005CHROMAT_FILE: MSMg01no121_n11.g1 PHD_FILE: MSMg01no121_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,549,886 - 101,550,085)(101,690,611 - 101,690,886)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAATT
CAGCACCTTTCGCAACACCCGTCGGCGCTCTTACCCACTGAACCATCTCA
CCAGCCCCCAATCACAGACTCTTGAGGGAGCAGAAAATACAACAGCAATC
CACAACAACAGTGTTTTGGTCAGGAAGTCCACAAATACCTAAAACTCCGG
TTCCTAGAGATCGCCACCTTCTTCTGGACATTTGGAGTACTATATGCATG
CCAGGACATAACCACACACATACACACATTATTTTAAGTGTCTAAACCAA
AAATAGCTTAAAAAAATATAGAAATTAGACTTTACCAAAATTAAATTGTT
TAAACAATATCTTATGTCTAGAGCATGCTAAGTGTTTTTCCTTCTAGAGT
CTTTGCCAGGCCCACATTATCAACTGCATGCCACTAGTTCCTATCTGTCT
GTGATATCAACGAGTGGGAAAATTATACAACAGCCTCCACAACTGAAGGT
CTGAGGAGGAAATTTGCTTTCCTAATATGACTTCCATTTTTCTGCTTTCT
TCTATCACTTTTATTATTTACACCTTTGTTGTCGCCGCTGCTGCTGCTGT
TCTAGAGAGGGTTTCTCCAGGAAGATCTGGCTCTTCTGGATTTCACACTG
TAGACCACCCTGGTCTCTCACTCACAGATCTTCCTGCTTCTGCCTC
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAGGAAGCTTGGCAGCTGTCTAGAAAGTGT
GTGTAGGACCAGAGCCTCACTTCTGCTACAGCCAGCACTGCCTAGCTGTG
CTAGAGTCTGGATTTTGTACCCTTATTTAAAGTAGCAGTTGTTGCTGTTG
ATTGTCATTTTATACCAACTAAGCTATTGCTCACATGATACCCCTATCCA
TCACATTAAGGGTCCAACATTCCTCCTTCAAAGTTCAGCTAAACTCCAAC
TACTTATGAGAAATCTAAATCGCTCTCTGCCCCCTGAACTTCTGAATGCC
TATGTTTTTGCTCCCCGCCCCCGCGCTACATAAGTTATTAAATCAGATAT
TATCTGTTGTCTTATCATTCAAAACTATTGAAACGAGGATTGGGACAATG
TCTTTGTTTTTCTCTCTATTAGTTGTGCTTGTATATGCTTCACCGTGGGA
CTAGTTGAGACCCTAATCTAGAACCAAGTGATTTTAGCTACAGATAAGGT
CCAAGAGAGAGACATAGAGTCAAGAATCTTCCTCACAGCGTCTTCTAGTG
AGAATTTTGGTTTCTTTTATAAAAAATGACATATTTTCAAAATATGTTTT
CATTTTAATCCCGGATATGAGGTCCGCGTTCACGCTTCACAGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_n11.b1 MSMg01no121_n11.b1 CHROMAT_FILE:
MSMg01no121_n11.b1 PHD_FILE: MSMg01no121_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:45 2005
         (201 letters)



>mm_chr4_101549686_101550286
          Length = 601

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttttggtcaggaagtccacaaatacctaaaactccggttcctagagatcgccacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttttggtcaggaagtccacaaatacctaaaactccggttcctagagatcgccacct 260

                                                                       
Query: 61  tcttctggacatttggagtactatatgcatgccaggacataaccacacacatacacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctggacatttggagtactatatgcatgccaggacataaccacacacatacacacat 320

                                                                       
Query: 121 tattttaagtgtctaaaccaaaaatagcttaaaaaaatatagaaattagactttaccaaa 180
           |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 321 tattttaagtgtctaaacaaaaaataacttaaaaaaatagagaaattagactttaccaaa 380

                               
Query: 181 attaaattgtttaaacaata 200
           ||||||||||||||||||||
Sbjct: 381 attaaattgtttaaacaata 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_n11.g1 MSMg01no121_n11.g1 CHROMAT_FILE:
MSMg01no121_n11.g1 PHD_FILE: MSMg01no121_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:45 2005
         (279 letters)



>mm_chr4_101690411_101691089
          Length = 679

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaggaagcttggcagctgtctagaaagtgtgtgtaggaccagagcctcacttctgcta 60
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 476 aagaggaagcttggcagctgtctagaaagtgtgtgtaggaccggaggctcacttctgcta 417

                                                                       
Query: 61  cagccagcactgcctagctgtgctagagtctggattttgtacccttatttaaagtagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cagccagcactgcctagctgtgctagagtctggattttgtacccttatttaaagtagcag 357

                                                                       
Query: 121 ttgttgctgttgattgtcattttataccaactaagctattgctcacatgatacccctatc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 356 ttgttgctgttgattgtcattttataccgactaagctattgctcacatgatacccctatc 297

                                                                       
Query: 181 catcacattaagggtccaacattcctccttcaaagttcagctaaactccaactacttatg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 296 catcacattaagggtccaacattccttcttcaaagttcagctaaactccaactacttatg 237

                                               
Query: 241 agaaatctaaatcgctctctgccccctgaacttctg 276
           ||||||||||||||||| ||||||||||||||||||
Sbjct: 236 agaaatctaaatcgctccctgccccctgaacttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)