BAC Information

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BAC

Clone NameMSMg01-122G04
Chromosome4 (Build37)
Map Location 46,785,218 - 46,785,834
singlet/doubletsinglet
Overlap geneGabbr2
Upstream geneLOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122G04.T7 (MSMg01no122_g04.b1)MSMg01-122G04.TJ (MSMg01no122_g04.g1)
ACCAG332262AG332263
length1,1291,133
length of high quality
(start - end)
205 (70 - 274)613 (74 - 686)
definitionCHROMAT_FILE: MSMg01no122_g04.b1 PHD_FILE: MSMg01no122_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:47 2005CHROMAT_FILE: MSMg01no122_g04.g1 PHD_FILE: MSMg01no122_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCGGCCTATCGACTCATTAGGGAGAGGATCCGCGGAATTCCGACTCAG
TCAGTGCCATTAATGTCACTAAAGCAGAATGGACTCTGTGCTCTTACCTC
AGTGAACTTTAGGGATGAAGATGGAGAACAAGATGCTATCAAAAATTTCA
CTTTATGAAAATTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTATGT
ACTGTGACATGTTTAAAAAGTATATGGTAGCATTCATAGGGATCCCAATC
ATAATGATTTGTGTGAAGGTTTGAGCTCACCTTGTTCTCTGTCTGTTTCT
TGCTCACTGATCCACACACTTTCCATCCCTATGACTTCAGCTCCTATAAG
CTGCTGTTGTCTATCCAAATTCACACATCTTTTTTTTCATCTTAGCTGTT
TCTCCCTTATATTGATTTTGTGATGAGGGTTTTTTATGAAGTGAGCCCTT
GATCTCTGAGTGAGTATATGGAATTGGTGCATATAATTTTTTTTCTCCCT
GGTGCGCTTACTTTTTTTCTCCCTTTAGTTCATGTCCTCTGTTATCTTTA
TCTGTTGATTCTCTTTTGTTTCTGGTACTTTTCTTTTTGATTATCATTCT
CTTTCTTTTTATTTTTTCTTTTTGCATTTTTTGTTTTATTCATTTTATTC
TTATTTTTTTTTTCTATTTTTCTTTTTTTTTCTTTTTTCTTTTTCTTTTT
ATTTTCTCCTCTTTTTTTTTCTTTTTTTTTAGTTCACTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTCTTTTTTTTTTTCTCTTTTCTCTTCTTCTTTATT
TTTCTTCTCATTTTCTCTATTCTTTTTTCTATTCCTTTTCTTTCCTTTCC
TTTTTTATCTCCTCTTTTTTCTCTTCTCCCTTTTATTTTTATCTTCTTTC
TTTTTTTTTTTTTCTCTCCTTTTTACTTTTCTTTTTTTTTTTTTTTCTTT
TTTTTTTTTTTTATTTTTTTTCTTCTCTTCTTTTTTTCTTCTTTTTCTTT
TCTTCTTTTTTCTCTCCTTTTTCTTTTTTACTCATCTTTCCTTTATTCTT
TCTCTCTTTCTTTCTTCTCTTTCCGTACCTTTCTCTTATCTTTTATTCTC
TCTCTTCTCTACCTCTTTCTTTTTACTTC
NNNNAAGCCACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACTTTAAACTTACAGACCTGTACATGGTGAGTGCTC
TCTCACCTCCAATATGCCAGGGGGCCCAACCTTAAGTGTGAACCCATTAC
AGATTAGGAAACTTGAGTTCTTGCCAGGTTTATTCAATTCAGCTATCAGG
TGACAACATGTCTTTGGAGTGCATGCTTTAATGACTCTACATCTCTTAGG
GAGACATCCCTCTGCCCCCTCACTGTGGACCCTCTTGCCCTTCCACAGTG
TTTTATGCCCCCCCACCAGATTTTAGGTCTTGACAAGCTGAAGCAGGGAC
CTGTGGGAGGCTTGAATTCTGTTGAGAAAGAAGAGGGAGTTGGGTGTTGG
GGAGGGATAAGAGATTCACAATCTCATGAGCAAATGGGTCTTCGGAGCCT
TTCTCACTACTCCCACAGGGGCTGGCAGGAGCCAGGCTTGGAGTGTCACA
TGGAGAGTGTGCAAGTCACCTCTGCATGAGCACATACAGGCCGGCGACAC
ACATCAGGCCTCGAAGCCTTTCATCATGTCATCTGTAATTATGTCAGCTG
TTCTCCTCAGAGCCTAGGAGACCTCTCTCCTGCTCAGCATCCTGGGCTAA
TATACCTTGACATGTGCACCAAGGGGTTGTCCTAGCCTCAATTAAGGGAC
TGTGGGGAGAGAGTGTGGAGTTTCTCTGACAGGCTCTCGTCCAGGTCTTT
TCCTGAGTTTTCCACAGTAGTGGGTTATCCTTGACGCTTCCTTATTTGCT
TATTCAATTTGGTCAATGCTTTATATCTTTTCTATGTGTGCGTACCTGAT
GTCTTCCTTGCCTCTTTTGTTTTCTGCTTTCTCTAATTCCTTTTTTTTTC
TCCTCTCATTCTACTATCCCTTTCTATCTTTTATCTCCCCACCCCCCCCT
CTCCCTTCTCTTACTCTTCTCTTTTTTCTTCTTCTCTTTTTTTTTTCCTC
CTTTTCTCCTTTATCTTCTTACCATTTCTTCGCATTTCTCCTTATTCTTT
ATTACCCCTTCCTTTCTCCTTCTTTTCTTACTCCTTATTCTCTACCTCCT
TTCATTGATCANCTAATTCTCTTCCTCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_g04.g1 MSMg01no122_g04.g1 CHROMAT_FILE:
MSMg01no122_g04.g1 PHD_FILE: MSMg01no122_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:47 2005
         (613 letters)



>mm_chr4_46785018_46786034
          Length = 1017

 Score = 1091 bits (564), Expect = 0.0
 Identities = 603/620 (97%), Gaps = 10/620 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacagacctgtacatggtgagtgctctctc-----acctccaatatgccagggggccca 55
           |||||||||||||||||||||||||||||||     ||||   |||||||||||||||||
Sbjct: 201 ttacagacctgtacatggtgagtgctctctctcagcacct---atatgccagggggccca 257

                                                                       
Query: 56  accttaagtgtgaacccattacagattaggaaacttgagttcttgccaggtttattcaat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 accttaagtgtgaacccattacagattaggaaacttgagttcttgccaggtttattcaat 317

                                                                       
Query: 116 tcagctatcaggtgacaacatgtctttggagtgcatgctttaatgactctacatctctta 175
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 tcagctatcaggtgacaacatgtctttggagtacatgctttaatgactctacatctctta 377

                                                                       
Query: 176 gggagacatccctctgccccctcactgtggaccctcttgcccttccacagtgttttatgc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gggagacatccctctgccccctcactgtggaccctcttgcccttccacagtgttttatgc 437

                                                                       
Query: 236 cccccc-accagattttaggtcttgacaagctgaagcagggacctgtgggaggcttgaat 294
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 cccccccaccagattttaggtcttgacaggctgaagcagggacctgtgggaggcttgaat 497

                                                                       
Query: 295 tctgttgagaaagaagagggagttgggtgttggggagggataa-gagattcacaatctca 353
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 498 tctgttgagaaagaagagggaggtgggtgttggggagggataatgagattcacaatctca 557

                                                                       
Query: 354 tgagcaaatgggtcttcggagcctttctcactactcccacaggggctggcaggagccagg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgagcaaatgggtcttcggagcctttctcactactcccacaggggctggcaggagccagg 617

                                                                       
Query: 414 cttggagtgtcacatggagagtgtgcaagtcacctctgcatgagcacatacaggccggcg 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 618 cttggagtgtcacatggagagtgtgcaagtcacctctgcatgagcacatacaggctggcg 677

                                                                       
Query: 474 acacacatcaggcctcgaagcctttcatcatgtcatctgtaattatgtcagctgttctcc 533
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acacacatcaggcctcaaagcctttcatcatgtcatctgtaattatgtcagctgttctcc 737

                                                                       
Query: 534 tcagagcctaggagacctctctcctgctcagcatcctgggctaatataccttgacatgtg 593
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 738 tcagagcctaggagacctctctcctgctcagcatcctggactaatgtaccttgacatgtg 797

                               
Query: 594 caccaaggggttgtcctagc 613
           ||||||||||||||||||||
Sbjct: 798 caccaaggggttgtcctagc 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1017
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1007
Effective search space:   607221
Effective search space used:   607221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)