BAC Information

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BAC

Clone NameMSMg01-122L23
Chromosome4 (Build37)
Map Location 97,120,468 - 97,179,624
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122L23.T7 (MSMg01no122_l23.b1)MSMg01-122L23.TJ (MSMg01no122_l23.g1)
ACCAG332525AG332526
length1,0151,031
length of high quality
(start - end)		839 (41 - 879)749 (93 - 841)
definitionCHROMAT_FILE: MSMg01no122_l23.b1 PHD_FILE: MSMg01no122_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:33 2005CHROMAT_FILE: MSMg01no122_l23.g1 PHD_FILE: MSMg01no122_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,179,044 - 97,179,624)(97,120,468 - 97,121,216)
sequence
NCCGTTCNNNNNNNGGCACTGGGCGCTATAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCAGACTATGAAGCCTTTGTCTGGAACATTGAAGCCAAGGT
TTGGGGCTTGGACTGGTATTCTACAGTTTCACAGTCTGTCTCAGATATTG
GACCCTGCATGACACAGGTTAGAAATGCTCTGTGAGGAGTCTTTAAAGAG
ACTGACAGCTAGTGATATGACAGTGGCTTGGTCTTACAGCATTTCTGTGT
TTGACTTTCTAACAGCAGCTGGTTCTGTTTTGAACCTTGAGTTCCCTGAG
CAAATGTACTCCTAGGGACTTTCTTCCTTCAGAATGGGTGGCTACGTTCC
TTGGACTGCAATCACTTTTAGTTTGCAAAGTGGGTTGTGTTTTCTCTCGT
TTCAACATTAGGGTTTTGTACAGTTAAATTTAAAGTTCAGGTCATCAACA
AACAATCTTTTAGTACAGTCATATGATAAAATATTTTGGATCCGCTTACC
TTCACATTCACTCAGTGCTCCATGAAACCCTTATTTGCTCTTTCCTATTT
GTCTTTGCTTTTACTAGCCATCATTTCCTTTAGGTCTACAACCACCTCCA
GGCTAACACTATCACCTGTGCTATATTGTGGACATTTAGATGTCATTAGA
ATTCTTTATAATTTGCCAGGTTTTACAAGTAAACTGAGAATTTATAAGCA
GGGATGTGGGTTTGTCATGAGATCCTGGTGCCTAGAAAAGTGACGTGGTT
TGCTAAGTAAATCAATGCATGACCCTTTGTGAAGCCCAGGGTCTGCAGAC
CAAGGAGCATTGCTGATGGCATCTCTGACACTGACCCTTGCGGCCACCAT
GATGACTAGTGGCTGTGATGCTGCTTAACATGGCCAGTGATATTCTAGGG
CAGAGGTGCAGAGGTGATATGACACAGGGGGAAGGGGAGAGAGAGAGATA
GATATTTATCGTCCTCTTTTCTTTTTTTTCTTTTTCTCTTTGTCTTTCTC
TCTTCTTTCTCTCTC

NNGGAATATATNNNNTAACGATGTGATGCTGGGGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGACATCAGAGGAGC
AAAACAAAATTAAATTTAAAAAGTGTACAGGAATAATGGTTAAAAAAAAT
CACAGAAGCAATGTTCAGGTCATTGGCATTTAAAAGAAAGAAGAAAAAGA
GAAAGGAGTAGAAATTTTATTTTAAAAAGTAATAGCCAGAAAACTTAACC
AGCGTGGGGAAAGCTATAACTGTCCGGGTATACAGGAAAGTCAGATGTCT
TCAATTAGATACAAATACAATGACTTCCTACCATATTAAAATCAAACTAC
CAAAGCCCAAAGATAAAGACAGGACTTGGAAAGCAGCAAAAGAAGTGCCA
AGATACCAAGTAGTAGAAGCTCACAGGACAAGAGAGGGAATTAACATAGT
CAAATTTCTAAGGAGCAATAAATAAATATAAATAAATAAATAGCACTAAC
ATAATTGTACCCAACAGCACTCCCTTCAGAAATGAATATAAGACAAGCAA
ATCTGAAATAGTGCATCCTACAGGAAATGCTGTGGGTTTATAAATTAAAG
AAAAAAATGTAAAATTGTTGAATGAAAACATTTAATAGTATAAAACACCT
TGGTAAGAGTATGTCAGCAAATTCAGAATATTCTAATGCTGGAATGATCA
CGTGCAATTTGCTTGTGTCTTTATCATGAAGATCAGAAGACAGAATTGGT
AGTAGTACTAATAATGGAAATAAATTTTCAGGGATATGTAATATAAAATG
TGAGTTGTAAAATCATCTTGACATGTGTACAGCAGCAGGACTCGGGAGGT
GAGGTCAGTCTGGGTTTCGTAACTGGCATTATAGAGAAAGAAGAGAATGG
CGGAAAGAAGAAAGGCAATGAAAGTGAAAAAATAAAGATAGGGAAAGGAG
AAGGGAGGGGATGGTAAAATGGCCTTTGGGAGGCCCGGAAAGGGAAAGAA
TTGTGGAATTAAATATTTTTAAATTGAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_l23.b1 MSMg01no122_l23.b1 CHROMAT_FILE:
MSMg01no122_l23.b1 PHD_FILE: MSMg01no122_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:33 2005
         (839 letters)



>mm_chr4_97178386_97179624
          Length = 1239

 Score = 1046 bits (541), Expect = 0.0
 Identities = 571/581 (98%)
 Strand = Plus / Minus

                                                                        
Query: 257  tgagcaaatgtactcctagggactttcttccttcagaatgggtggctacgttccttggac 316
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1239 tgagcaaatgtactcctagggactttcttccttcagaatgggtggctactttccttggac 1180

                                                                        
Query: 317  tgcaatcacttttagtttgcaaagtgggttgtgttttctctcgtttcaacattagggttt 376
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1179 tgcaatcacttttagtttgcaaagtgggttgtgttttctctcgcttcaacattagggttt 1120

                                                                        
Query: 377  tgtacagttaaatttaaagttcaggtcatcaacaaacaatcttttagtacagtcatatga 436
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 tgtccagttaaatttaaagttcaggtcatcaacaaacaatcttttagtacagtcatatga 1060

                                                                        
Query: 437  taaaatattttggatccgcttaccttcacattcactcagtgctccatgaaacccttattt 496
            || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1059 tacaatattttggatccgcttaccttcacatttactcagtgctccatgaaacccttattt 1000

                                                                        
Query: 497  gctctttcctatttgtctttgcttttactagccatcatttcctttaggtctacaaccacc 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  gctctttcctatttgtctttgcttttactagccatcatttcctttaggtctacaaccacc 940

                                                                        
Query: 557  tccaggctaacactatcacctgtgctatattgtggacatttagatgtcattagaattctt 616
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 939  tccaggctaacactatcacctgtgctatgttgtggacatttagatgtcattagaattctt 880

                                                                        
Query: 617  tataatttgccaggttttacaagtaaactgagaatttataagcagggatgtgggtttgtc 676
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  tataatttgctaggttttacaagtaaactgagaatttataagcagggatgtgggtttgtc 820

                                                                        
Query: 677  atgagatcctggtgcctagaaaagtgacgtggtttgctaagtaaatcaatgcatgaccct 736
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 819  atgagatcctggtgcctagaaaagtgacgtgttttgctaagtaaatcaatgcatgaccct 760

                                                                        
Query: 737  ttgtgaagcccagggtctgcagaccaaggagcattgctgatggcatctctgacactgacc 796
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ttgtgaagcccagggtctgcagaccaaggagcattgctgatggcatctctgacactgacc 700

                                                     
Query: 797  cttgcggccaccatgatgactagtggctgtgatgctgctta 837
             ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 699  tttgaggccaccatgatgactagtggctgtgatgctgctta 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 839
Length of database: 1239
Length adjustment: 10
Effective length of query: 829
Effective length of database: 1229
Effective search space:  1018841
Effective search space used:  1018841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no122_l23.g1 MSMg01no122_l23.g1 CHROMAT_FILE:
MSMg01no122_l23.g1 PHD_FILE: MSMg01no122_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:34 2005
         (749 letters)



>mm_chr4_97120268_97121416
          Length = 1149

 Score = 1440 bits (745), Expect = 0.0
 Identities = 748/749 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggagcaaaacaaaattaaatttaaaaagtgtacaggaataatggttaaaaaaaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggagcaaaacaaaattaaatttaaaaagtgtacaggaataatggttaaaaaaaatca 260

                                                                       
Query: 61  cagaagcaatgttcaggtcattggcatttaaaagaaagaagaaaaagagaaaggagtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagcaatgttcaggtcattggcatttaaaagaaagaagaaaaagagaaaggagtaga 320

                                                                       
Query: 121 aattttattttaaaaagtaatagccagaaaacttaaccagcgtggggaaagctataactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattttattttaaaaagtaatagccagaaaacttaaccagcgtggggaaagctataactg 380

                                                                       
Query: 181 tccgggtatacaggaaagtcagatgtcttcaattagatacaaatacaatgacttcctacc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaggtatacaggaaagtcagatgtcttcaattagatacaaatacaatgacttcctacc 440

                                                                       
Query: 241 atattaaaatcaaactaccaaagcccaaagataaagacaggacttggaaagcagcaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattaaaatcaaactaccaaagcccaaagataaagacaggacttggaaagcagcaaaag 500

                                                                       
Query: 301 aagtgccaagataccaagtagtagaagctcacaggacaagagagggaattaacatagtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgccaagataccaagtagtagaagctcacaggacaagagagggaattaacatagtca 560

                                                                       
Query: 361 aatttctaaggagcaataaataaatataaataaataaatagcactaacataattgtaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttctaaggagcaataaataaatataaataaataaatagcactaacataattgtaccc 620

                                                                       
Query: 421 aacagcactcccttcagaaatgaatataagacaagcaaatctgaaatagtgcatcctaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacagcactcccttcagaaatgaatataagacaagcaaatctgaaatagtgcatcctaca 680

                                                                       
Query: 481 ggaaatgctgtgggtttataaattaaagaaaaaaatgtaaaattgttgaatgaaaacatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaatgctgtgggtttataaattaaagaaaaaaatgtaaaattgttgaatgaaaacatt 740

                                                                       
Query: 541 taatagtataaaacaccttggtaagagtatgtcagcaaattcagaatattctaatgctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatagtataaaacaccttggtaagagtatgtcagcaaattcagaatattctaatgctgg 800

                                                                       
Query: 601 aatgatcacgtgcaatttgcttgtgtctttatcatgaagatcagaagacagaattggtag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatgatcacgtgcaatttgcttgtgtctttatcatgaagatcagaagacagaattggtag 860

                                                                       
Query: 661 tagtactaataatggaaataaattttcagggatatgtaatataaaatgtgagttgtaaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tagtactaataatggaaataaattttcagggatatgtaatataaaatgtgagttgtaaaa 920

                                        
Query: 721 tcatcttgacatgtgtacagcagcaggac 749
           |||||||||||||||||||||||||||||
Sbjct: 921 tcatcttgacatgtgtacagcagcaggac 949


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space:   841721
Effective search space used:   841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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