BAC Information

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BAC

Clone NameMSMg01-122M24
Chromosome4 (Build37)
Map Location 63,642,972 - 63,643,584
singlet/doubletsinglet
Overlap geneTnc
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122M24.T7 (MSMg01no122_m24.b1)MSMg01-122M24.TJ (MSMg01no122_m24.g1)
ACCAG332574AG332575
length1,0641,101
length of high quality
(start - end)
743 (83 - 825)627 (83 - 709)
definitionCHROMAT_FILE: MSMg01no122_m24.b1 PHD_FILE: MSMg01no122_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:42 2005CHROMAT_FILE: MSMg01no122_m24.g1 PHD_FILE: MSMg01no122_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTTTNNNNATTCATTGGGCCTATAGACTCACTAAGGGAGAGGATCCGC
GGAATTCTTTGTTAGCTCTGCTTTAAGGTTCTAATGGGATTATTTGAATC
TCTGGAGTTCAGTTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC
TATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGACAGCATCTTTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTCAATTCTTGATCTTACAGTGCAAGCCATTGCTGTTC
TGTTTAGGAATTTTTCCCCTGTGCCCATATTTTTAAGGGTTTTCCCCACT
TTCTCCTCTATAAATTTCAGTGTCTCTGGTTTATGTGGAGTTCTTTGATC
CACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCTCAT
CCTTCTACATGCTAACCGCCAGTTGTGCCAGTACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATC
TACCTACCTGTCTGTCGCTGTACCAGTACCATGCAGGAAACACCAATTAC
TTTTCTTTGATTTCTCTTAACATCAAAGGACTCAATTACCCAATAAAAAG
ATATAGACTAACAAACTGGCTACACAAACAGGACCCAACATTTTGCTGCT
TACAGGAAACCCACCTGGGGGATAAAGACAGACAATACCTCAGAGTAAAA
GGCTGGAAAGCAATTTTCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTA
ACCCATTCTAATATCAAATAAAATTTGACTTCCAACTCAAAGTCATTCAA
AAAAGAACAATAAGGGGGCACTTCATACTTCATCAAAGGGTAAAAAATCC
TACCAATAAAGTTCCTTCTTACAAAAATGTGAACTTCTCCAATTTCTGAA
ATAATCTTATTGCCTCCCAAAATGGCACAGGGGTCAAGCCCAACATTTTC
CTTTTAATAAGAAA
CATCTATNTNNTCATGCAGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTATTCTTCCTATAGGGTTGCAT
AATCACAAGAGCTCTGGAGCACAGAGAGACTTCTGTTTAGATCCTGGTTC
CTTTAAGCATAGACTGTGTTCTCCTGGACTGTGTGGACAAATCTCTGCAC
CATAAAAAGAGTATGATTTCCTTAGCAGGGTGGTGAGGATTTAGTGATCT
GATTCATGTAAAAGTAACAACATAAGACCTGGGATGTAGTAAGGGCGTCA
TAGTGTCTCTCCTAGATCATCAACTATTAGACATTTAAATTCCAAAAACT
TCCTTCTATTGAATAGTATGTATCGGAGAATATGATCCCTTGTTCTTTGG
TCAGATGTTACAGTCACACTAGATGAGTGAGGGACAGTGGAGACATGGAA
CCGAGACCTGAAAGGATTATGACATGTTTATAAAATGTCCCACGTGAGCC
ATCAGTACTGTGGTTAGCAAACTGAAGGATGGAGCTGGTAAGGCTAGCAG
GACGGTCTTCTTAGACTCACAAATACAAGCCGACACTGTGTGTAAGAGCC
CTCCACGGGGGAAATAAGACCCTTTTTCCTATCAGCTATGCTAAGGAGAA
AGGCAAAGATACCCAGACACATCATTACTATGGTCACAAAACTTATGTGA
CTCTTTAGAGGGAGAAACAACGACCTGAAAATGCAGTACTTTATAAAAAA
AAAAACAAAACCTGTAGGAATAGTCAAGATGGCATTGCTTAAAGACAACC
CCCTGAAAGGAATCTGAATAAAAATCCTAAATTCTCTAGGAAAGGAGAAA
TCACTGAAAAGTTGATGATTCCCCTCCTCCAAAGATCCTGGGCCTTTGTC
TAATTGGAACCATCCAAGAAATCCCAAGGCCCCTAAAAAGTTTAAAATAA
CTGGGGCCTCAAAAGGTCCAGGTCTTCCTTATTATGGGCCCTTTAATTGG
TTGAACAGGTGGTTAACCTGGTCAAATTTAATTTTTTTAACTAATTCTCA
AAACCCTCATAATGTAACCGGGGGTAAATCCCCAGTTTGTTAATCTTAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_m24.g1 MSMg01no122_m24.g1 CHROMAT_FILE:
MSMg01no122_m24.g1 PHD_FILE: MSMg01no122_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:42 2005
         (627 letters)



>mm_chr4_63642558_63643584
          Length = 1027

 Score = 1147 bits (593), Expect = 0.0
 Identities = 608/613 (99%)
 Strand = Plus / Minus

                                                                        
Query: 15   gcataatcacaagagctctggagcacagagagacttctgtttagatcctggttcctttaa 74
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1027 gcataatcacaagagctctggagcacagagaggcttctgtttagatcctggttcctttaa 968

                                                                        
Query: 75   gcatagactgtgttctcctggactgtgtggacaaatctctgcaccataaaaagagtatga 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  gcatagactgtgttctcctggactgtgtggacaaatctctgcaccataaaaagagtatga 908

                                                                        
Query: 135  tttccttagcagggtggtgaggatttagtgatctgattcatgtaaaagtaacaacataag 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  tttccttagcagggtggtgaggatttagtgatctgattcatgtaaaagtaacaacataag 848

                                                                        
Query: 195  acctgggatgtagtaagggcgtcatagtgtctctcctagatcatcaactattagacattt 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  acctgggatgtagtaagggcgtcatagtgtctctcctagatcatcaactattagacattt 788

                                                                        
Query: 255  aaattccaaaaacttccttctattgaatagtatgtatcggagaatatgatcccttgttct 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  aaattccaaaaacttccttctattgaatagtatgtatcggagaatatgatcccttgttct 728

                                                                        
Query: 315  ttggtcagatgttacagtcacactagatgagtgagggacagtggagacatggaaccgaga 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  ttggtcagatgttacagtcacactagatgagtgagggacagtggagacatggaaccgaga 668

                                                                        
Query: 375  cctgaaaggattatgacatgtttataaaatgtcccacgtgagccatcagtactgtggtta 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  cctgaaaggattatgacatgtttataaaatgtcccacgtgagccatcagtactgtggtta 608

                                                                        
Query: 435  gcaaactgaaggatggagctggtaaggctagcaggacggtcttcttagactcacaaatac 494
            |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 607  gcaaactgaaggatggagctggtaaggctagcaggacggtcttcttgggctcacaaatac 548

                                                                        
Query: 495  aagccgacactgtgtgtaagagccctccacgggggaaataagaccctttttcctatcagc 554
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547  aagccgacactgcgtgtaagagccctccacgggggaaataagaccctttttcctatcagc 488

                                                                        
Query: 555  tatgctaaggagaaaggcaaagatacccagacacatcattactatggtcacaaaacttat 614
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487  tatgctaaggagaaaggcaaagatacccagacacatcattactatggtcataaaacttat 428

                         
Query: 615  gtgactctttaga 627
            |||||||||||||
Sbjct: 427  gtgactctttaga 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)