BAC Information

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BAC

Clone NameMSMg01-122P07
Chromosome4 (Build37)
Map Location 132,846,766 - 132,847,264
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990
Downstream geneLOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P07.T7 (MSMg01no122_p07.b1)MSMg01-122P07.TJ (MSMg01no122_p07.g1)
ACCAG332684AG332685
length1,0971,102
length of high quality
(start - end)
677 (126 - 802)655 (117 - 771)
definitionCHROMAT_FILE: MSMg01no122_p07.b1 PHD_FILE: MSMg01no122_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:00 2005CHROMAT_FILE: MSMg01no122_p07.g1 PHD_FILE: MSMg01no122_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTCTTNNNNGACATTCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTAGGTAGNCAATCCCTATAAAGTCCTTATGATCCTCCTGT
CTCTGTCCCCTGACTTAAGGGATCCTGGGCATACACCACCACACCTAGTT
AATGTGATGCAGTTTATTGCACAGTAGGGATGGACCCCAGAGCACTTTCC
ACTGAGTCACACCCTTGCCCTATCTTTTGATAGCCAGTTCCAGTTGGCAT
CTGTGTGCTTGCTGGGTGCTTCGAAGCCTCTCAGACTTTTATTCAAAGCA
GATACCACCTCTCATAGTTCCAACTCCACATCAATTCATTTTTACTAAAG
TGACTGCTAAAAACCCAAATTTGTTTTTGAGACAGGGCCACTGTATTATG
TAGCTCTGGCTGTCCTGGTAGACCAGGAATCTTGAACTTAGAGATACAGC
TGCCTCCCCAGTGCTGGGTTAAAGGTATTGTTACTAAAGCCAGCTAAAAC
CCAGCTTCTTGAAAGGGTATCGTCAAAAGCAGTGTGATGTAGTCTCATAA
TTAGACTGCAGGCTTCCTCAAGCTGACTGTTCTCGTAATGGTCAGTAGAC
TTAAAACATTCCTCTTCGCTGTCAGCACCCTGCCAGGGCACTGTAAGATC
CTTGATACAGTTTAGGGGTTGCTAGTGCCACGAGAACAGTTCTACTGTGA
AACTAAGAATCTTTGTGGCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG
AGTTCCAAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAT
AAACAACAACCACCACCAAATCTTTGTAGCTGTGGGAAGAGCCCAGCTGG
GATAGCTGGCTGTGCCTCATCAGGTCTAGACAAAGACCCTGTGTTCCCCA
ATAAAGGTTTCCACAAGCTTCAAGGCGTTTTCCAGAATTGCAAGAAAAGT
TGCAGTGGCCCAAGGGCCAAGTAAATTGCAATGCTGGGGTTGTGGTTTGG
GAAAATCTGAATATGGATAGTATTGGGTCCTTGTGGTGTGGGGGCTTTAA
AAATTATCTTTCTCTTCCCTTTTGCTTTATCACTCTTAATCTTTTTA
NNCCCACATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTAAAGGCCACAAAGCACAAGTAGATACATTG
AAGGTCCGTAGAGAGGAAAGGAAGGGAGACATGATGTAAGTATATTATTA
TTTTAAAAAATTGTTTTACTCCCAATCCCAAATCAGACAAGTTAGAAAAT
TCCTTTCCCTTACTGTGAGCTGCTGCTGCTGCTTTTTTTCTTCCTCCTTT
TCCTCCTCCTCCTCTTTTTTCCAAGATAGGTTTTTCTGTAGCCCCAGGTA
TCCTGGAACTCAGAGAGATTCTATTGCAAGTGTCTCCCAAGTGCTGTGAT
CAAAGGCATGTGCCATCACACCTGGTTTACTATGTGCTTCTTATTAATAG
GACGTAATGTTATCCTCCCTTCCTCCTTCCCTCCTTCCCTCCCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCGGAAATGAACCCAGGACCTCATATATG
CTAGGCAAGTGACACACTATTGAGCCACATCCAAAGCATTTTTAAATTTT
TTATTTTTCTCGATACAGGGTCTCACTATGTAGCTCTGACCTTTCTGGAA
CTCACTAGACCAGGCTGGCCTCAAATGCACATAGACCCATCTGCCTCTGT
TTCCCACGTGCTGGGATTTTAGGCATGCCACCCAGTTTTATTGTTCATTG
TTTTTGTTTGTTTAAGATTTATTTATTTTTTTATTTAGTACACTGTAGCT
GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTAATTACAGATGGTTGT
GAGCCATCATGTGGTTGCTGGTATTTGAACTCATGACCTTCAAAAGAACA
GTCGGCACTCTTAACCGCTGAGCCCTCTCTCCCGCCCTTGTTGTTCATTT
TTGTGGGGGCCATGTATAACATACCCTAATAAGCTTTAATAAGGGGCTAA
TAATAACCCTCCTGTTTTAATTCTGTTGATGGGCCCCGCTGCCTTTGCTT
GCCCTGTTGTTTTTTTTTCGTTTTCCCGCTGTTTATTTCTTTTTTGNTTC
CCACTTCTACCCTTTTCTCCATTTTACTTTCTCTGGTGCTGTTTGTGGTG
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p07.b1 MSMg01no122_p07.b1 CHROMAT_FILE:
MSMg01no122_p07.b1 PHD_FILE: MSMg01no122_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:00 2005
         (677 letters)



>mm_chr4_132846188_132847264
          Length = 1077

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Minus

                                                                        
Query: 179  accacctctcatagttccaactccacatcaattcatttttactaaagtgactgctaaaaa 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 accacctctcatagttccaactccacatcaattcatttttactaaagtgactgctaaaaa 1018

                                                                        
Query: 239  cccaaatttgtttttgagacagggccactgtattatgtagctctggctgtcctggtagac 298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 cccaaatttgtttttgagacagggccactgtattatgtagctctggctgtcctggtagac 958

                                                                        
Query: 299  caggaatcttgaacttagagatacagctgcctccccagtgctgggttaaaggtattgtta 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  caggaatcttgaacttagagatacagctgcctccccagtgctgggttaaaggtattgtta 898

                                                                        
Query: 359  ctaaagccagctaaaacccagcttcttgaaagggtatcgtcaaaagcagtgtgatgtagt 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  ctaaagccagctaaaacccagcttcttgaaagggtatcgtcaaaagcagtgtgatgtagt 838

                                                                        
Query: 419  ctcataattagactgcaggcttcctcaagctgactgttctcgtaatggtcagtagactta 478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  ctcataattagactgcaggcttcctcaagctgactgttctcgtaatggtcagtagactta 778

                                                                        
Query: 479  aaacattcctcttcgctgtcagcaccctgccagggcactgtaagatccttgatacagttt 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  aaacattcctcttcgctgtcagcaccctgccagggcactgtaagatccttgatacagttt 718

                                                                        
Query: 539  aggggttgctagtgccacgagaacagttctactgtgaaactaagaatctttgtggctgag 598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  aggggttgctagtgccacgagaacagttctactgtgaaactaagaatctttgtggctgag 658

                                                                        
Query: 599  ttcaaggccagcctggtctacagagtgagttccaaggacagccagggctacacagagaaa 658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  ttcaaggccagcctggtctacagagtgagttccaaggacagccagggctacacagagaaa 598

                               
Query: 659  ccctgtctcaaaaaaataa 677
            |||||||||||||||||||
Sbjct: 597  ccctgtctcaaaaaaataa 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)