Query= MSMg01no123_a11.b1 MSMg01no123_a11.b1 CHROMAT_FILE:
MSMg01no123_a11.b1 PHD_FILE: MSMg01no123_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:11 2005
(322 letters)
>mm_chr4_115664395_115665116
Length = 722
Score = 526 bits (272), Expect = e-154
Identities = 303/314 (96%), Gaps = 2/314 (0%)
Strand = Plus / Minus
Query: 9 cttaaaggcacttataataaaacaatactgaaagagagcacacggatccatacaccagac 68
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 722 cttaaaggcacttataataaaacaatactgaaagagagcacacagatccatacaccagac 663
Query: 69 taatgcggggaaaagttttgagtgtacatgctatgggaatgccaagattccaggagacta 128
||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct: 662 taatgcggggaaaagttttgagtgtacatcctatgggaatgcaaaggttccaggagacta 603
Query: 129 agtttccttgaaactctttgcctcgtgactgcttccaggctcttaggcctgtcacacaga 188
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 602 agtttccttgaaactc--tgcctcatgactgcttccaggctcttaggcctgtcacacaga 545
Query: 189 cttcactggagtggatgtagcagtttagctctttacctgatgaaccatgaggagccatat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttcactggagtggatgtagcagtttagctctttacctgatgaaccatgaggagccatat 485
Query: 249 tttagccattggcacagctatggaggtatatttttgctgaatggtagcccagaccacagg 308
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 484 tttagccattggcacagctatggaggtatattccagctgaatggtagcccagaccacagg 425
Query: 309 ggttcttatctggg 322
|||||||||||||
Sbjct: 424 tgttcttatctggg 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_a11.g1 MSMg01no123_a11.g1 CHROMAT_FILE:
MSMg01no123_a11.g1 PHD_FILE: MSMg01no123_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:11 2005
(330 letters)
>mm_chr4_115514185_115514914
Length = 730
Score = 630 bits (326), Expect = 0.0
Identities = 329/330 (99%)
Strand = Plus / Plus
Query: 1 acatgttggggctaaggtatgccacaccacatctgaccttatttgtattttttaattgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgttggggctaaggtatgccacaccacatctgaccttatttgtattttttaattgtg 260
Query: 61 tacatgtacacatgaatataggttcccaggaagatcataagagggtgttaaattctctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatgtacacatgaatataggttcccaggaagatcataagagggtgttaaattctctga 320
Query: 121 agctgaaatttcaggtcattttgagccatttaccatgaatgttgggaactgaactcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgaaatttcaggtcattttgagccatttaccatgaatgttgggaactgaactcaggt 380
Query: 181 cctttgcaagagtagcacatgcccttaactactgagccatctttctggttctctacaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgcaagagtagcacatgcccttaactactgagccatctttctggttctctacaaaa 440
Query: 241 tttttaaaaaagaaagaaagaagaaagaacttaaatgatttgattttaattctttgagat 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tttttaaaaaagaaagaaagaagaaagaacttaaatgaattgattttaattctttgagat 500
Query: 301 ggactctgtgatacccaggctggcatcaat 330
||||||||||||||||||||||||||||||
Sbjct: 501 ggactctgtgatacccaggctggcatcaat 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
