BAC Information

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BAC

Clone NameMSMg01-123F21
Chromosome4 (Build37)
Map Location 64,405,335 - 64,405,702
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123F21.T7 (MSMg01no123_f21.b1)MSMg01-123F21.TJ (MSMg01no123_f21.g1)
ACCAG332986AG332987
length1,1851,587
length of high quality
(start - end)
436 (41 - 476)153 (133 - 285)
definitionCHROMAT_FILE: MSMg01no123_f21.b1 PHD_FILE: MSMg01no123_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:00 2005CHROMAT_FILE: MSMg01no123_f21.g1 PHD_FILE: MSMg01no123_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTTTTNNNNNNAGTCACTGCGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCCGCACCTAGGGCAAAGGCTTTTATTGAGAGATTATTA
ACAGACAATGAATCATAATCCCCATGACACCCAGAAGGACAAACTTTGCG
CAGTACCGAAATCTATCTGTATTCATGAGGGACTTAGTTAAAAATCTTGT
AAGACCCTTGAGATAAAGACAAATAAAAGCAGTGATCTCAAATATTAATG
CTTTTAACAAAGGCCTGATAAAACCTTTACATATTTTTCTTCATTATTCT
GACCGTGAAATTAAAAAAAACAAAACAAAAATAAAAGTTCTGTGACTTAC
AGTAAGGTTTTTAAGAGAAGGAAAGAGAAACTCTATGCAAGAGGAATGCT
ATGTAGGAAAGCTGATTTTATAGGTCTTCAGAGGTCTTGGCATACCACCT
CAGCTGCAGGCTTTTTTTTTTTTTTCCCCCCCCCCATAATACGCTTCCCC
CGCCCAAAAAAAAAAAGGAGGTGACACATTCTATTTACTTGATAAGTTAA
TGTGAGTTTTAATCACCAAAATTTTGTCTTTATCACATACTCATGGCCAA
CCTATTTTTATAGTTTAGTTTATTCATTAATTTTACAACAATTGGTTATT
TGTAGTACCTTTGTCCAACCTAGATTCAATGCATAACAGCCCTCTTACTC
CTCCTTAAAGCTTCTGACATTATGCCCCGCAAAAAACGCTCCCATTAGCC
TCAATCTCCTCTGGTTTCCCTACAAATCCAAATTTTCCTGGCTTTGCCTT
ACTCTAAAAAAAACCTGCCTTGGCTTTTTCTATCCAACCCTTCCCTCCTT
TTTTCCCCCCACTCCTTGTTACTCTAATGTACCTTGCGCCGATCCACAAA
CTCCCACCTTGCCGCACCATTTGTCTCTTCTTCTCCTCTGCTCCCATGTC
TCTCCTTTTATCCCTGCTCTCTTCTGGGCTTACTCCCTCAATCCTCCCTT
CCTTCCCGTCCCTCATACCCTCTCTCCCTCTGTCTTTCCTCACTCCTTTT
ATCACCATTCTTACATCCTCTTTCCCCCCCACTTCCTCTCCTCCCTCACT
CTTAACCAACCCCCTGTCATTCTCTCCTCTCCATATCTCTCTTATCTACT
TCTCCTCCGTCTTCCAATTCCTCTCTTTATTTCAT
AAGATATNTNNNNAAAGACGGTAGNCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGGATGGAAAGAGATAAACT
GAGAAAACCTGTCTCAAGACCTAGAAAGACCCGAAAAAATCTGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACCACCCCCCTCCCCC
TCACTCCCCCCTCCCCCTTCTCCCCTCCCCTCTACCCCCCCCTTCCTCCC
CCCTCTCCCCCCCCCCCTTCTTCCCCCTCCCTCCTCTCTCACCCCCCCCC
CCCCCTCTCCCACTCCCCTCCTTTTTTCTTTCTTCCCCCCCCTCCCCCCC
CCTCTCTTCTCTTCTCCGGCTCCCACTACCCCCCCTTTTTTTTTTTCCCC
CCCCCCCGAAATTTCCCTCCCCCCTCCCCCCCCACAAAAAAAAAAGGGGG
GGTTCTTNTTCTCCCTATCTTCCCTCCTTACTCCCCTCTTCTCCTCCTCC
CCCCTCCCATCCCTCCCCCTCCTTCTTCTCTCTCCCTCCCCCCTCTCCTT
CTCTCCTTCCTCCTCTCCCCCCCTCACCTCCCCTCCCCCTCCCTCCCCCT
CCTCCCTCCTCCCCTACTCTCCCCATCTCCCCTTCCCCCCCTCCCCCCTT
CCTCTCCCCCTCCTCTCCCCTCTCTTCTTCCTCCCTTCTCCTCCCCCTCC
CCTCTCCCCCCTTCCTCCCTTCCCCCTCCCACCTCCCCCCTCACTTTTCC
CTTCCCCCCTCTCCCTCCCTTATTCCCTACTCCATCTCCTCTTCCTCCTC
CCCCTTCACTCCCCCCCCTCCCCTACCTTCCTCCGCCCACTCCTCTCCCT
CCTCCTCCCCCTCCACTCCCCCTCTCTGCTTCCTCACTCACCTCCCCTCC
TCCCCCCCTTTCCTCCCCCCCCTCTCCTCCATCTCCTCCCTCTCTCCTCT
CCCCCCACCTTCATCCCCTTCCTCNTCTTCATTTCTCATCCCCTTCCTCT
CCCTTCTCTCCACTCTCCCCCTCCTCCTTCTTCCTTCCTCCTCCCCCTCC
TCCCTCTGCTCCTCCCTACCTCCTACCTTCCCTTCCCCCCCACTCCCTCC
CCTTGCTCCCCTCCTCTCTCCCCCCCCCTCTTCTCCTCCTCTCACCCCTT
CCCTTGCCTCTCCCTCTCCCACCTCTCCCCCTCACTCCTCCCACTACTCT
CCCCNCTTCCTCCCTTCTCTCTCCTCCCCTCTCCCCCTCCTCTCCTCTCC
TTTCTCCTCTCTCTATCCAGCCCCCTCTTTTCCGCTCTCTCTCACTCTCC
CTCCTCCTTCTCATCTCTTCCCCCTTCTTCTCCTCCATCTTTCCCTCCCT
CTCCCTCCTCCCTTCCTCCTCTCCCCCTCTCCCTATCCTCCTCCTCTCCC
TCCTACCCTCTTATCCCCCACTTTCACCTCCTCCCCTCCCTTTCCTCTCC
CCCTCCTCCTCTCTCCCTCTCTCTCTCCCTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_f21.b1 MSMg01no123_f21.b1 CHROMAT_FILE:
MSMg01no123_f21.b1 PHD_FILE: MSMg01no123_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:00 2005
         (436 letters)



>mm_chr4_64405073_64405911
          Length = 839

 Score =  511 bits (264), Expect = e-149
 Identities = 353/414 (85%), Gaps = 50/414 (12%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcc-gcacctagggcaaaggcttttattgagagattattaacagacaatgaatcat 76
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaattccagcacctagggcaaaggcttttattgagagattattaacagacaatgaatcat 322

                                                                       
Query: 77  aatccccatgacacccagaaggacaaactttgcgcagtaccgaaatctatctgtattcat 136
           |||||| ||| |||| |||||||||||| ||||||||||                     
Sbjct: 323 aatcccaatgtcaccaagaaggacaaacattgcgcagta--------------------- 361

                                                                       
Query: 137 gagggacttagttaaaaatcttgtaagacccttgagataaagacaaataaaagcagtgat 196
                                    |||||||||||||||||||||||||||||||||||
Sbjct: 362 -------------------------agacccttgagataaagacaaataaaagcagtgat 396

                                                                       
Query: 197 ctcaaatattaatgcttttaacaaaggcctgataaaacctttacatatttttcttcatta 256
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 397 ctcaaatattaatgcttttaacaaaggcctgataaaacgtttccatatttttcttcatta 456

                                                                       
Query: 257 ttctgaccgtgaaattaaaaaaaa---caaaacaaaaataaaagttctgtgacttacagt 313
           ||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||
Sbjct: 457 ttctgaccgtgaaattaaaaaaaaaaacaaaacagaaataaaagttctgtgacttacagt 516

                                                                       
Query: 314 aaggtttttaagagaaggaaagagaaactctatgcaagaggaatgctatgtaggaaagct 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaggtttttaagagaaggaaagagaaactctatgcaagaggaatgctatgtaggaaagct 576

                                                                 
Query: 374 gattttataggtcttcagaggtcttggcataccacctcagctgcaggctttttt 427
           ||  | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gagctaagaggtcttcagaggtcttggcataccacctcagctgcaggctttttt 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 839
Length adjustment: 9
Effective length of query: 427
Effective length of database: 830
Effective search space:   354410
Effective search space used:   354410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)