BAC Information

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BAC

Clone NameMSMg01-123K23
Chromosome4 (Build37)
Map Location 39,467,172 - 39,467,445
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665520, LOC100039487, 1700009N14Rik
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123K23.T7 (MSMg01no123_k23.b1)MSMg01-123K23.TJ (MSMg01no123_k23.g1)
ACCAG333227AG333228
length1,1941,195
length of high quality
(start - end)
331 (135 - 465)274 (130 - 403)
definitionCHROMAT_FILE: MSMg01no123_k23.b1 PHD_FILE: MSMg01no123_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:44 2005CHROMAT_FILE: MSMg01no123_k23.g1 PHD_FILE: MSMg01no123_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAAACTTNNNNNCGGAACATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCAGGCCCATACCTAACCATGTATAAAAGCAATCTACA
GCAAACCAGTAGCCAACATCCCCCTTAAATGGTGAGAAGCTTGAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGTCCAGTCTCTCCCTACCTAT
TCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAG
ATCAAGGGGATACAAATTGGAAAGGAGAAGTCAAATTATCACTTTTTGCA
GATGATATGATAGTATATATACGTGACCCTAAAAATTCTACCAGAGAACT
CCTAAGCCTGATAAACCGCTTCAGTGAAGTAGCTGGAGATAAAATTAACT
CAAACAAGTCAATGTTCTTTCTCTACAAAAAGGACAAACAGGCTGAGAAA
GAAATTAGGGCTTTTTTTTCCCCCCCCCTAGTCACAAATAATATAAAATA
CAAAAAAATGAGTCTAACTAAGGAAGTGAAAGATCTCTATGACAAGAACT
TCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCAGGATCAAAATTGTAAAAATGGCTATCTT
GCCAAAAGCAATCTACAGATTCAATGCAATCTCCATCAAAATTCCAACTC
AATTCTTCAACGAATTAGAAAGGGCAATCGGCAGATTCATCTGGAATAAC
AAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAAGAACCTCTG
GTGGAATCACCATGCCCGACCTAAAGATGTACTACAGAGCAATTGTGATA
AAACCTGCATGCTACTGGGTATAGTGACCGACAAGTAAACCATTATAACA
GAAATTGAATACCCCGAGATGAACCCCCCCCCCTTAGGTCCCTTTGGATC
TTTCGACAAGGTATCTTAACCCTTCCTGTTGGAAAAAAACTGTTTTTTTC
CACAAATGGTGCCTGGCCAAATTGGCTCTTTATTTTGTTACAAAATTTTT
GAATTTGACTCCGTTCCTATTCTCCTTGGACCTAATGGCCAAATCTCTAG
TGGGATTTAATAAAACTCCTCCCTTATAAACCCTAAAACCCTTGTAAATC
TTTTTCTAGTTACTACATTTTTGGTTAAAAATTCTTCCTAAAAA
GATTCTNNTTTTATTGATGGGAGTCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTTATAGGCTCTACAGGGTCTCGC
ATCACAGGGCATCGACCTTTACAAAATTGGAGAATAAGTAGCAGGATTTC
AGGAGGAAGAGTTTGTAGCAATCGACATTGTGATTTTTCACAAAGCACAC
ATATCCTCCCACAGGATGCTAAACATTCTTCCAATCTATGTGAATCATGC
AGTGGGTATCCAGCAGAGACAAACCCCTTAGACTCAGGACTTGTTAGAGC
ATGTGCAGCTATTCGGAGAACTTTTTCCCCATTAAGATAGAAAAAGTATA
TACAGCCAGTGTGTATGGAGACTCAGGTGGCCTTTAGGGATCTGAGAGAC
TCAAAGATGTCAAGGCACTATATAAAATTTAAAGCTATACAACACAACTT
GACATCTGTTCTCTCTGACTTCTGTCAAGGCCTCCTAAAGGAATCATAAA
AGTTCTTCCTTTTGTTTTTCCCTAATCGGCAATTGAACAACATTCTGTTA
GCATCTAAAGTGAGACAGACTTCCTTCTGCTTCACTGCCTTCATCCCAGT
GTAACATAGGGATGTTAGGCATTTTCATGTTTTTAAATACATGAAACATT
CATATATGCTAATTTTCTTGCCAAATCTCACAAAACTATTGTATTAAAAA
TGAGAGAAAGTGTTTATAAAAAGGTGTGATTGCTTATTTCTTCAACAAGA
ATGGTCTGAGAAAAGTGAGGCCAATTTTTACCACATTAAAGGAAACTTTG
TCTCATTGTCTCTGCAGAGCATTTCCTCCAGTAACGCAGCACTCAACTGG
ACCCCACACCATGCCGGGACTGAAGGATATGTGCGATAGCCGAAAGTGCT
CCTTCCCCCTACTGAGCAAATAAATCCCAGCTTCAGCTTGGAAACACTGC
TAACCTAACATGCCAAAGAGCTCCCCCCCCTTTCCCCAAAGGTTTTCCTG
GTACAAGACCCAAACCGAAAGGATTTTCCTTACCCTTCCTTAAAAGAGCT
TTATCCCCTCTCCCCTCTCTTAGGCAAAAATAAAAAAAAGTCCCTTTTTG
CCCTCGACAACACAAAAAGGATTGTGTCCCCGCACCTTACCTTTGTACAG
GTTCTATAAATTTTCTCCAAACACCCATCCCCTATTATATGGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_k23.g1 MSMg01no123_k23.g1 CHROMAT_FILE:
MSMg01no123_k23.g1 PHD_FILE: MSMg01no123_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:44 2005
         (274 letters)



>mm_chr4_39466972_39467645
          Length = 674

 Score =  522 bits (270), Expect = e-153
 Identities = 273/274 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaataagtagcaggatttcaggaggaagagtttgtagcaatcgacattgtgatttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gagaataagtagcaggatttcaggaggaagagtttgtagcaatcgacattgtgatttttc 415

                                                                       
Query: 61  acaaagcacacatatcctcccacaggatgctaaacattcttccaatctatgtgaatcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acaaagcacacatatcctcccacaggatgctaaacattcttccaatctatgtgaatcatg 355

                                                                       
Query: 121 cagtgggtatccagcagagacaaaccccttagactcaggacttgttagagcatgtgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagtgggtatccagcagagacaaaccccttagactcaggacttgttagagcatgtgcagc 295

                                                                       
Query: 181 tattcggagaactttttccccattaagatagaaaaagtatatacagccagtgtgtatgga 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tattctgagaactttttccccattaagatagaaaaagtatatacagccagtgtgtatgga 235

                                             
Query: 241 gactcaggtggcctttagggatctgagagactca 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gactcaggtggcctttagggatctgagagactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)