BAC Information

Click to search

BAC

Clone NameMSMg01-124B07
Chromosome4 (Build37)
Map Location 50,271,491 - 50,271,821
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B07.T7 (MSMg01no124_b07.b1)MSMg01-124B07.TJ (MSMg01no124_b07.g1)
ACCAG333525AG333526
length1,2231,249
length of high quality
(start - end)
570 (111 - 680)331 (122 - 452)
definitionCHROMAT_FILE: MSMg01no124_b07.b1 PHD_FILE: MSMg01no124_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:41 2005CHROMAT_FILE: MSMg01no124_b07.g1 PHD_FILE: MSMg01no124_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCTGTACC
CCCTCCTTCCCTTTAAGACCTGGTACCTAGGACTGCCAGCTTCACTACCC
CTTTAAAGTATCCACTTGGNTCCTAGAACTGCTTAGATAAAGCAAGATTC
ACCTCCTCCTCCATGTCTTGATCTGGTGCCTGGGACTGTTTATGGCACTC
CAAGATAGCTACAAGATGTTTGATGGCTGCCTGGGACTGTTTAGTTAGGG
CTGACACGCCAAGATAAACTGCAGAATGTTTGAAGGCCTCCCGGGACTGT
TTTAGGGCCGACATTCCAAGATAAGCTGCAAGATGTTTGAAACCTGCAAT
CAGCATCCGCCCCAGATGTCCATCCCTTTCTCTGTATTTTATTACACCTC
CTCAACCCCTCCCTATTATTTCTCATTGTGTGCTTATAACCAGTCTCTTA
CCCTCCATTAAACAGACCATGGCAACTCTTTACTTGGTCTCGCTTCCCTT
TCTCTGCCCATTTCTCTTGCAGGCCTCGGTCCTCCTCAACCCACTGAATA
ACTAAGTCCTGCTGGATGGAACAAATTGGGTATTCCAAGCTTGTAGGCTA
ATATCCACTTATCAGTGAGTATATAACATGTGCGTTCTTTTGTAACTAGG
TTATCTTACATAGGATGATATTTTTCTAATCCAGTTGCCTAAAAATTTTA
TAAATTCATTGTTTTTAATACCTAAGTAGTAGTCAACTATGTAAATGTAC
CATATTTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCC
AGCTCCTGCCTATTATAAATAAGGCTGCATAGTGAACATAGTGGAACATG
TGTCCTTATTACATGTCGAGCCTCTCTTGAACAATTCCCCAGAAATGGTG
TTGCTTGGTGGTCCGGCTAGTAATATGTCCAATTTTCTTATAAACCACAA
ACTGATTTCCAAAATGTTTGTACTACTTTTCAATCCCATTCGAAAAGGGA
GGCGGGGCCTCTTTTTTTTCCACATCCTCCCTAGCTATTGCCGGCCTCCT
GAGTTTTTTTATTTTATCCCCTTCTGAACTGGTGGGGACAGTAAAAATCC
CCCGGTTTGTTTTGAATTTCCCATTTCCCCGGATTAAAAAAGTAGGTGCT
ACACTTCTCCCTTATGGATCTTCTCCCCTCCGTTCTCCTACTACTCCCTC
ATCTAACACAATCCTTGTGTTTG
TTCTAGCAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTATAAGGCTGACCTAAGGGAAGGCAGAAGTA
CAAATCTCCTTTAAGATAGACTTAAAAAGCATGGAGGAAAAGGGGCTGAG
AACGAATTTATCAACATGTACTTCGGGCTTCCCAACTCACATTCTTACCC
AGGCTTGTCTCAAAATCCCCAGTTTGTTGTCTTATCAACTTCCAAAGCTA
GGAATTCAGGAGTGGGCCAGAAGATCCAGGTCTGTGTAAGAAAGTCTGAC
TTGCTATTGCTCAGTAGTGTAGGTGACTAGAAATAATGGTGATCAATATC
CTAAATGCAAGAAGCAAATATTGAATGTTTTTTCATACAAAATCATAATT
TATCAAATATATGTATTTATCTAATTTAAGCTTTGTTCAATATAGACATG
TCTTTATACCCACCCGAATGGTTTCTCCAGTTTTGTGCAATAGAGATATT
TAATTTAAATAAACTTACAAGATGGTAGGCCATGTCCCAAATGACGTTTG
CTTCTTAAAATTCATGCATTTGGGTGGAATTCACTTCTGGTTTTGATGAA
TATTAATGGCTTATATAATTTATGTAAAAAATATGATTTGTATGCAACCT
CTAACACCATGTCATAAAATATATTATACTTTGCTCTCTGCTCTTTTTAC
TCCTAAGCCTGTGTTAAGTCAACTGCCATGTCATAAAGACTGCCATCACA
GTCTATTTTGGCTTCAGTAGCAAATTCCAAAGAATGAGAGATTCTTAGCC
CACAGATTTTATTGCTGTTTGGAAGTCTGGGATGTTTGAGATCAAGTTCC
TGACAGATTTAGCTTTCTTTCTCCATACCATCTGCCACCTCACTTTATCT
TCACTGTTCAAAAAGGACAGCATTGGGATAGCGTCCTCCCAAAAATGGCA
TTTTAAAAGAGTGCATTTTTTATTTATGAGGACTCTGCCTTCAATATCAT
ATTTATGCCAAATGGGCCGGCCGGTAAATAAAACCATGGGGGAAGGTGAA
TTAATCCACCTTCCTTACCCGGAAGTCGAACCCTCAAAGNACAACTTATA
TCTATTTGATATAACTACAAACAAAATATTTTGCCCTACATCTACCTATG
TTTCCTTCCATTTCAACATCTCACGGCTAAAAAATTCTCTCAAATTGGCT
CTTCACTACCTCACTACGTGCTTCTTGCCGCTTCATCACACATCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b07.g1 MSMg01no124_b07.g1 CHROMAT_FILE:
MSMg01no124_b07.g1 PHD_FILE: MSMg01no124_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:41 2005
         (331 letters)



>mm_chr4_50271291_50272021
          Length = 731

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaagcatggaggaaaaggggctgagaacgaatttatcaacatgtacttcgggcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttaaaaagcatggaggaaaaggggctgagaacgaatttatcaacatgtacttcaggcttc 260

                                                                       
Query: 61  ccaactcacattcttacccaggcttgtctcaaaatccccagtttgttgtcttatcaactt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaactcacattcttacccaggcttgtctcaaaatccccagtttgttgtcttatcaactt 320

                                                                       
Query: 121 ccaaagctaggaattcaggagtgggccagaagatccaggtctgtgtaagaaagtctgact 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagctaggaattcaggagtgggtcagaagatccaggtctgtgtaagaaagtctgact 380

                                                                       
Query: 181 tgctattgctcagtagtgtaggtgactagaaataatggtgatcaatatcctaaatgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctattgctcagtagtgtaggtgactagaaataatggtgatcaatatcctaaatgcaag 440

                                                                       
Query: 241 aagcaaatattgaatgttttttcatacaaaatcataatttatcaaatatatgtatttatc 300
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 441 aagcaaatattgaatgttttttcatacaaaatcataatttaacaaatatatgtatttacc 500

                                          
Query: 301 taatttaagctttgttcaatatagacatgtc 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 taatttaagctttgttcaatatagacatgtc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)