Query= MSMg01no124_f17.b1 MSMg01no124_f17.b1 CHROMAT_FILE:
MSMg01no124_f17.b1 PHD_FILE: MSMg01no124_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:21 2005
(592 letters)
>mm_chr4_65162412_65163403
Length = 992
Score = 1114 bits (576), Expect = 0.0
Identities = 588/592 (99%)
Strand = Plus / Plus
Query: 1 agtgccctggcttgattttacaatcacataaaacaagtctcaccttgtatctgtttccag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agtgccctggcttgattttacaatcacataaaacaagtctcaccttgtatctgttttcag 260
Query: 61 ctcccttttgaaaaccatcaaaaagctcatcttgtcctctgtatgattacaaaatacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ctcccttttgaaaaccatcaaaaagctcatcttgtcctctgtatgattataaaatacttt 320
Query: 121 catcttttcaactgtcattgttgtctctgggcagggcactagggatgcctaaataatagc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcttttcaacagtcattgttgtctctgggcagggcactagggatgcctaaataatagc 380
Query: 181 atcaacagtgataactcacatgcatagatgtctgtgtatcaggagctattcaatgtactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaacagtgataactcacatgcatagatgtctgtgtatcaggagctattcaatgtactc 440
Query: 241 tgcatatttacttacttattgctaacaaccatttatgagataagatggcatccttattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatatttacttacttattgctaacaaccatttatgagataagatggcatccttattta 500
Query: 301 tgttttacagctgaggcccttcaaagcttcaaataattgtcttaaaaatacaaacagtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttttacagctgaggcccttcaaagcttcaaataattgtcttaaaaatacaaacagtaa 560
Query: 361 gtcatggaactggtatatgacatgggaatctaaaaatagaaccataaaacctcccaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcatggaactggtatatgacatgggaatctaaaaatagaaccataaaacctcccaaggt 620
Query: 421 acacagtacagtccatcaaaaaggaaaacaacctgtgaatgtggctccaacagtaaatta 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacaggacagtccatcaaaaaggaaaacaacctgtgaatgtggctccaacagtaaatta 680
Query: 481 cttatctcctacgtatgaggacctgaatttgaactgcagaatcctcatttaaaagtcagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttatctcctacgtatgaggacctgaatttgaactgcagaatcctcatttaaaagtcagg 740
Query: 541 agtgttggagcaggcttgtaattctaagactgggcaggtagagacaggcaga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgttggagcaggcttgtaattctaagactgggcaggtagagacaggcaga 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_f17.g1 MSMg01no124_f17.g1 CHROMAT_FILE:
MSMg01no124_f17.g1 PHD_FILE: MSMg01no124_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:21 2005
(728 letters)
>mm_chr4_65242720_65243849
Length = 1130
Score = 1307 bits (676), Expect = 0.0
Identities = 719/740 (97%), Gaps = 12/740 (1%)
Strand = Plus / Minus
Query: 1 agattccactctcaatgagatatgcttattcccatttgatcagctgagacaataaagaca 60
||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1042 agatttcaccctcaatgagatatgcttattcagagttgatcagctgagacaataaagaca 983
Query: 61 agcttcttgaggtagattaaattatagcattagtggctgcaa----------aggccggg 110
|||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 982 agcttcttgaggtagattaaattatagcattagtggctgcaaaggatttcagaggcaggg 923
Query: 111 catggtgggcaaagctcagagacaggagctactaagtatataaaccataataggaagcaa 170
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 922 catggtgggcaaagctcagagacaggagctactaagtatatgaaccataataggaagcaa 863
Query: 171 tggaggctgcccaggctctatcccagggagcacatgacaaaatcagaaggaaaggaaaat 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tggaggctgcccaggctctatcccagggagcacatgacaaaatcagaaggaaaggaaaat 803
Query: 231 ttctgaatgaaacaggtaagcatcagaagaggaattgatgcccacaccacacaattctat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttctgaatgaaacaggtaagcatcagaagaggaattgatgcccacaccacacaattctat 743
Query: 291 ttccttttatttatttcatttcccacttgtaaccgatttcattggtttagtaaccccatt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttccttttatttatttcatttcccacttgtaaccgatttcattggtttagtaaccccatt 683
Query: 351 ctaaacaactagtgatccaaatatcccgacattaagagaggg--ttttttcccccctcta 408
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 682 ctaaacaactagtgatccaaatatcccgacattaagagaggggttttttttccccctcta 623
Query: 409 aagctgcagaagttttaggaagcagaactgttattcaaaccaaaattggcttgacctgat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagctgcagaagttttaggaagcagaactgttattcaaaccaaaattggcttgacctgat 563
Query: 469 gctcaggcttctctcattatattgttttatggaaaatataaaactggaacaccaacttaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gctcaggcttctctcattatattgttttatggaaaatataaaactggaacaccaacttaa 503
Query: 529 aagaagggtgtaatttgtgtaagttgatgatagacagaagagaatttctggtcaggaaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagaagggtgtaatttgtgtaagttgatgatagacagaagagaatttctggtcaggaaaa 443
Query: 589 atatctctgagtatttacatcttgcttgtagaatcattctgtgcaacctacaaatttaac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatctctgagtatttacatcttgcttgtagaatcattctgtgcaacctacaaatttaac 383
Query: 649 atgtggaaagtgagggccacacaaagcaacagattatcttgtaaaaatagtagggtatga 708
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgcggaaagtgagggccacacaaagcaacagattatcttgtaaaaatagtagggtatga 323
Query: 709 catgatgtaaggcatcatcc 728
||||||||||||||||||||
Sbjct: 322 catgatgtaaggcatcatcc 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1130
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1120
Effective search space: 804160
Effective search space used: 804160
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
