BAC Information

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BAC

Clone NameMSMg01-124G12
Chromosome4 (Build37)
Map Location 38,337,850 - 38,338,618
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124G12.T7 (MSMg01no124_g12.b1)MSMg01-124G12.TJ (MSMg01no124_g12.g1)
ACCAG333769AG333770
length1,2731,272
length of high quality
(start - end)
415 (51 - 465)762 (84 - 845)
definitionCHROMAT_FILE: MSMg01no124_g12.b1 PHD_FILE: MSMg01no124_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:28 2005CHROMAT_FILE: MSMg01no124_g12.g1 PHD_FILE: MSMg01no124_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAATTTTNNNNAAAGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGAGGATTGGGATCTGCCCGGGCGGGAGTACTTTGCCTGA
GCATCAGCAGCAGACATCTCGGTTCCGGGTCCCCTCCGAGTGTATCCTGC
ACAGACAGCTGGCCATTTTTCACGGCCAGAGGATAGGGACCTGCCCGGTG
CGGGAATGCTTTGCCTGAGCATTGGCAGCAGACATCTTAGTTCCAGGACC
CTGCCGAGTGTACCCTGCACAGACATCTTAGTTCCAGGACCCCACCAAGT
GTATCCTGCACAGCTCCAGAGAATACCAGATGGCGAAAGGCAAACATAAG
AATCCTACTAACAGAAATCAAGACCACTCACCATCATCAGAACGCAGCAC
TCCCAAGCCACCTAGTCCTGGGCACCCCAACACAACCGAAAAGCTAGACC
CGGATTTAAAAGTTTATCTCACCGCCCCGATGGTAGAGGACATCAAGAAG
AACTTAAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTT
ACAAGTCCTTAAAGAAAAGCAGGAAAACACAACCAAACAGATAGAAGTCC
TTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACCAA
ACCATACTAGACCTAAAAAGGGAAGTAGAGACAATAAAGAAAACCCACAG
TGAGGCAACGCTGGAGATAGACACCCTAGGAAAGAAATCTGGAACCATAG
ACGCGAGCATCAGCAACAGAATACAAGAGATGGACGAGAGAATCTCACGT
GCAGAAGATTCCCTAGAGAACATCGGCACAACCATCCAAGATAATACCAA
ATGCAAAAAGATCCTAACTCAAAACATCCCGGCAATCCCGGACACAATGA
GAAGACCAAGCCTACAGATAAAAGGAGTTGATGAGAATGAAGATTTTCAC
TTAAGGGCCCGCAAAATATTCAACAAAATAATTAAAGAAACTTCCCAAAC
CTAAGAATGACATGCCCAGAAGGCAAAGCCGGTGGATCTTTGAGTTCCAC
TCCCGCCTGGTCTACAAATGGATTTCAGGAAAGCCCGGCTAACCCAAGAA
ACCCTGTCTCCAAACAAACCAAACTAATCACCCCTCCTTAAAAAACCAAC
TAAAAAACTATGGATGTTCCTTCCTTTTCAAAAGTTTGGAACCACTCTCC
TCTAGAAATTTTTTTTTTTTCCCCGACCTTGAAACCCCCCCCAAAAAAAT
GGTCCCAATAACGTGCTGTTATT
CATCTTTANTNTAAAGATGGNATGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTCTACCTGCCTCTGCCTCCCAAGT
GCTGGAATTAAAGGCCCCTTCACTGCCCAGCTTGGAGATGTTTTAAAAAT
CACTTGTAAATAGGATTTTTGAAAAGAAAACTATATGTTTTTATGTTTTT
TTATGTGAAATGGAAGGTTTTTAATGTGTAAAGCAAACTTTTATACTAAC
ATAAGTCACTGGAGAATTTTTTAAATCTAATGAACGTTCTAGGGGTTGAA
ATATTCTGCATGGAAATAGAAATAAAATTGAGTCTGGAAGTGCATACATG
TAAACCCATCTACTTGGAAGGGAAAGGCAGGCAGAGTGCCAGTCCAAGCC
CTCCCTGGGCTACAGAGCAGGTTCAAAGGCAGAAACTTAGGAAGATCTTA
TTTCTGTTAGTTTCTTACATTTTAAAAATGCAGAACGTATAGTTCTGCTG
TAGCACGCACAGAAACTCTTTGTGAGGCTTTAGATTCAGTTTTCATGATT
CATTTATATATAAAAAAGTAGCTAAGGAGGGTACAAACACAAATTTAATC
TAACTTAAGCAGTAGTTGAAAAACACCTAACTGCATCACATATAAAAGGG
AAAAAGTAAGGAACTAAATTACATATTGTGAATTGGCAAAGATTCTTTAT
ATTCTTTAGTGCATATGATACAAAAATGCTGTGATGATTTGTGATAACAA
AAAAGTAATCAATATATTGTACAACACTGAAGAGAACTGCAGTGAAAAAT
GGCTTCACCAGGGGAAAACATAAGAGACTAGAGTTCACTTTCTCAGTGTA
GGCAACACCATATATGCTATGGATTAACAATTCCATTAAATTGTTTCATC
ATGTAAGAAACTGTGGCTCAATAAAGTACCAAATGTGTATTTAGATGTCA
GTTTTTATAAATGCATCAATTATCATATACATTTTACCAATAGAAACATC
ATTTTACTATAAATGTAAAATCAATTTCCAAATCTTCTCTTGAAAAAATT
GAAATTAGAGCTCACTGGTATTTTAGTCTAATTTAAGGGCCCTACCGGAA
ATATAGTATTTTACCTTTTTTAAAACCCCAAAAATTTTCCCTGAAAGATC
CCCCTAAATTTATTTCCAATCTCTTTCCCCCCCACTAAAAAGACCCTGGA
ATAATTTTTTGTCCGGGGACCCTTTTTTTTATATGGCAGTATTATTTATT
TACCTTTATATAACCCTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_g12.g1 MSMg01no124_g12.g1 CHROMAT_FILE:
MSMg01no124_g12.g1 PHD_FILE: MSMg01no124_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:28 2005
         (762 letters)



>mm_chr4_38337659_38338818
          Length = 1160

 Score = 1344 bits (695), Expect = 0.0
 Identities = 749/773 (96%), Gaps = 15/773 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctctgcctcccaagtgctggaattaaaggc---cccttcactgcccagcttggagatg 57
           ||||||||||||||||||||||||||||||||   | |  ||||||||||||||||||||
Sbjct: 192 gcctctgcctcccaagtgctggaattaaaggcatacac--cactgcccagcttggagatg 249

                                                                       
Query: 58  ttttaaaaatcacttgtaaataggatttttgaaaagaaaactatatgtttttatg----- 112
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 250 ttttaaaaatcacttgtaaataggatttttgaaaagaaaactatatgtttttatgggttt 309

                                                                       
Query: 113 -ttttttta-tgtgaaatggaaggtttttaatgtgtaaagcaaacttt-tatactaacat 169
            |||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||
Sbjct: 310 ttttttttaatgtgaaatggaaggtttttaatgtgtaaagcaaacttagtatagtaacat 369

                                                                       
Query: 170 aagtcactggagaattttttaaatctaatgaacgttctaggggttgaaatattctgcatg 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagtcactggagaattttttaaatctaatgaacgttctaggggttgaaatattctgcatg 429

                                                                       
Query: 230 gaaatagaaataaaattgagtctggaagtgcatacatgtaaacccatctacttggaaggg 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaaatagaaataaaattgagtctggaagtgcatacatgtaaacccatctacttggaaggg 489

                                                                       
Query: 290 aaaggcaggcagagtgccagtccaagccctccctgggctacagagcaggttcaaaggcag 349
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 490 aaaggcaggcagagtgccagtccaagccctccctgggctacagagcgggttcaaaggcag 549

                                                                       
Query: 350 aaacttaggaagatcttatttctgttagtttcttacattttaaaaatgcagaacgtatag 409
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 550 aaacttagaaagatcttatttctgtttgtttcttacattttaaaaatgcagaacgtatag 609

                                                                       
Query: 410 ttctgctgtagcacgcacagaaactctttgtgaggctttagattcagttttcatgattca 469
           |||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 610 ttctgctgtagcacacacagaaact--ttgtgaggctttagattcagttttcatgattca 667

                                                                       
Query: 470 tttatatataaaaaagtagctaaggagggtacaaacacaaatttaatctaacttaagcag 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttatatataaaaaagtagctaaggagggtacaaacacaaatttaatctaacttaagcag 727

                                                                       
Query: 530 tagttgaaaaacacctaactgcatcacatataaaagggaaaaagtaaggaactaaattac 589
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tagttgaaaaacacctaactacatcacatataaaagggaaaaagtaaggaactaaattac 787

                                                                       
Query: 590 atattgtgaattggcaaagattctttatattctttagtgcatatgatacaaaaatgctgt 649
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 788 atattgtgaattggcaaagattctttatattctttattgcatatgatacaaaaatgctgt 847

                                                                       
Query: 650 gatgatttgtgataacaaaaaagtaatcaatatattgtacaacactgaagagaactgcag 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gatgatttgtgataacaaaaaagtaatcaatatattgtacaacactgaagagaactgcag 907

                                                                
Query: 710 tgaaaaatggcttcaccaggggaaaacataagagactagagttcactttctca 762
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tgaaaaatggcttcaccaggggaaaacataagagactagagttcactttctca 960


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1160
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1150
Effective search space:   864800
Effective search space used:   864800
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)