BAC Information

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BAC

Clone NameMSMg01-124H22
Chromosome4 (Build37)
Map Location 83,672,078 - 83,672,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124H22.T7 (MSMg01no124_h22.b1)MSMg01-124H22.TJ (MSMg01no124_h22.g1)
ACCAG333834AG333835
length1,2821,243
length of high quality
(start - end)
33 (207 - 239)458 (129 - 586)
definitionCHROMAT_FILE: MSMg01no124_h22.b1 PHD_FILE: MSMg01no124_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:40 2005CHROMAT_FILE: MSMg01no124_h22.g1 PHD_FILE: MSMg01no124_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATTCTCNNNNAACATTGTGCGCTATATACTCTCATATGGAGAGAATC
TCCGCAATTTTCTACTTGCTGAAAACCAATAAATACTCCTATATTTTTGC
CTTAACACTGGGTACTCTATATAACCCTCTAGCACCTTAGTTGTCCTACC
AATCTCTGGATCCTATTTATTTCCAATATGGGAGTAAAGTCCCCTGAATT
TTCCTTTCTCCTTTCAAGCCAGACATTTATTTTTAACAAGCTATGAAATC
ATCTGAGAGCAACTCGGTCACATCTGTTACTTTATATCTCGCTATCCTAT
TACCTTACATCTGACCTTGATTTCCCACTACTTTGATATTGCTGCCTCCT
CACTAATCCTTACGTAATTGCGATTTCCGAGCTGCATCCCCTTACTCGCT
CATTTACTTCTTGTTATCATACACTCATATGAAAGCCAGAGTCTCCACTC
GATCGGAGAGGTTTTTGCGTTCGACCCTGGACCACAGGCTGATGCGAGCA
AAAGAGCCTAATCACCTGTGGACGGCAGCATCGCGGGCCTCTGCTGAGGC
CCACAATGACTCTCGTTTATACTGAAGCTCGACCCTCCTATCAANAGTGT
CATATTTCACAGGCTCTCTTGAGAGGTCACAGGGACCTCAGGTTACTATA
TAGAGCACCTGCCATTACCCCCTATGTGTCTCCATCTACCACTCACCCTA
TCCGGACCACTTCCCTCCCTCTAAACGATATCCACCTGTCGCCCTGTCAG
GAAGAATTATACTTTCACGTTAGCTGCGCCACTGTGTGTATCGACTTCTC
CAGAATGGGCTCCTTCGACTCCGAATGTGTACATTAAATGCTTTGCCCCA
CCCTTTATGCCTGAACAGCTTCAGCCTTTTCCCGGTTTCCCATTCGACCT
TTTTGTCCCTACCCCGTGTGTTTAGCCTAACTTTATTCCCCCCTTTACAA
TCCACCCCCTTTTATATAACTTTATTTACTCTAAACCCAAACTTTTCCTA
CATCCACTTCCTTCCCCATATTTCCTTTAATTATCCTTGTCTCTTATCTT
ACCGGTTTCACCCCTCTTAATAAACACTTATTTTTCTTAATTCCTCCTCC
TCTTCCATTTACATCCCCGACTTTTCCTCTTCTAAATAAAATAACAACCT
TGATTAACGCTTCTTTTTATCTCCTCTTCATATTCAATTGCCCCCCTTTT
CTATCTTTAACCAATATCTCTTCTATTTCTTTGTGTTACACTAAACCTCC
TAACTTTACATTATCTCCCTACTATATATAAG
ATCTTATCNNTCCCCATCGGGAGGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCACTTTTAGATGAGGAATAATCCCA
GTACTGAGATCACACAACCCTTTCTTCAAAATAAGATTAAGAACTCTGCA
TTCTGGAAGAGAGACCCTGTCTGGTGATTAGTTGCCTGGAAGAGCTTGTT
ACAAGCCGAATAGAAGGAACTGTCATCCTGTTGACGGTTTCCAGGGACCA
AGGCTCCAGGACCTGCAGTAATTTCATTTGTCATCATTGCAAAACCAGAT
GGTCACGTGAGCTGCCAAAGCCTGCATCCGAGGAGGTTCACTTGCCAACT
GTCCTTAGTAATCAGAACTCGAGGTAGACAAGGCAGCTGTTTAGACAGAA
TTATTTCTATCGGTTACATTATCATCGTGGAAAAAAAATGGAGGCAACGC
AGTGGGAAAAACTCGTACTAAGTTCCAAACTCTAGGCAAAACCTGTAGCA
ATGAGGAAACCTCTAGAAATTGTGATGATAACCATGGCCACAGCCATGGC
CATTGTAAGGATGCTCCAAAAGAGTTCTCAACAGACAGGGTAGCACCACT
GTGCCATGAGGAGAGAGAAGTGTGACCCTGGGTGTCATGTGTGAGCTGAG
GGATGTGCATAGAGAGGTGGCTATTCAATCCAGGACATGGTGTCCTAAGG
CCATGATATTGAGTCTCGAAAGGGTACCAGAACTCGTGGCAGAATCATAG
GCAAACAGGTTTGTTCTTACTTTAGTTCACTCTATTAGCCCATGTGTCTC
AGACAATTCTCAGTCAACAATCTCCCTAAATTTGCTATTGTAGCCAAATA
GCTCCATCTCCTCCATGTTCTTTCCGGTACCACTAGGCCAATATGACCCT
TCCCCCTCTTCTTTCTTTTACCAGGTATTCCTCCCCTGAATGAAAAAAAC
TTTTTTACATCTTTACTCTCCCCCAATTACATGGTCTTTTCTTACCTACA
GGACCCTGCATAAAATTTCCCATTCCCTTGTCCTCTCCCCTTAAGGCAAG
CCTCTCGCATATCCTAATTTTACCCACTCGGCTCTAGTCATCAATAGTAT
AATGGTTCCCTCCTAAAATGTCATGGCTCTCTTCTTCCTTTAAATGGCTT
GGTAACCCCCCCTTTTGTTTTGGCCCCCTTATGGGACATCTCCTTGTCCC
TCTCTTCTTCAATCATCTCTATCTCCTTTCTTTTCACCTCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_h22.g1 MSMg01no124_h22.g1 CHROMAT_FILE:
MSMg01no124_h22.g1 PHD_FILE: MSMg01no124_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:40 2005
         (458 letters)



>mm_chr4_83671878_83672734
          Length = 857

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%), Gaps = 1/458 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataagattaagaactctgcattctggaagagagaccctgtctggtgattagttgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataagattaagaactctgcattctggaagagagaccctgtctggtgattagttgcctg 260

                                                                       
Query: 61  gaagagcttgttacaagccgaatagaaggaactgtcatcctgttgacggtttccagggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagcttgttacaagccgaatagaaggaactgtcatcctgttgacggtttccagggac 320

                                                                       
Query: 121 caaggctccaggacctgcagtaatttcatttgtcatcattgcaaaaccagatggtcacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggctccaggacctgcagtaatttcatttgtcatcattgcaaaaccagatggtcacgt 380

                                                                       
Query: 181 gagctgccaaagcctgcatccgaggaggttcacttgccaactgtccttagtaatcagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctgccaaagcctgcatccgaggaggttcacttgccaactgtccttagtaatcagaac 440

                                                                       
Query: 241 tcgaggtagacaaggcagctgtttagacagaattatttctatcggttacattatcatcgt 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tcgaggtagacaaggcagctgtttagacagaattatttctaacggttacattatcatcgt 500

                                                                       
Query: 301 ggaaaaaaaatggaggcaacgcagtgggaaaaactcgtactaagttccaaactctaggca 360
           ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 501 ggaaaaaaa-tggaggcaacgcagtgggaaaaacttgtactaaattccaaactctaggca 559

                                                                       
Query: 361 aaacctgtagcaatgaggaaacctctagaaattgtgatgataaccatggccacagccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaacctgtagcaatgaggaaacctctagaaattgtgatgataaccatggccacagccatg 619

                                                 
Query: 421 gccattgtaaggatgctccaaaagagttctcaacagac 458
           |||||||||||||||||||||||||||| |||||||||
Sbjct: 620 gccattgtaaggatgctccaaaagagttttcaacagac 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 857
Length adjustment: 10
Effective length of query: 448
Effective length of database: 847
Effective search space:   379456
Effective search space used:   379456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)