BAC Information

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BAC

Clone NameMSMg01-124H23
Chromosome4 (Build37)
Map Location 16,403,767 - 16,404,094
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124H23.T7 (MSMg01no124_h23.b1)MSMg01-124H23.TJ (MSMg01no124_h23.g1)
ACCAG333836AG333837
length1,2351,214
length of high quality
(start - end)
550 (126 - 675)328 (121 - 448)
definitionCHROMAT_FILE: MSMg01no124_h23.b1 PHD_FILE: MSMg01no124_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:40 2005CHROMAT_FILE: MSMg01no124_h23.g1 PHD_FILE: MSMg01no124_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATATCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTAAGAATGTTATCCCTTTATGAAAGCCTTCAAATTTACTTCTAGT
AGAGACTGTAGCCCTTACAAAGAACGAAGCTAGAAGATCTAAGGGTTTGT
CTGCAGAGTGATTACTTAGGCCAGTAGCCAGTCTTACCCAAACAAGGGAA
TATACAATGGCCTAGCCATGGGTTTACTGAAAAAGTTAGGGAATCCCACT
GAGACAGGAATCTTCACTATAGCCAGGTATAGTAGGCTACATTGCATTTT
AGAAGCAAGTTGGTGAATTCTTCTTACAAATGGAGATTCCCCACAGATAC
TTTAAAGAACAGCCAAGTTATACTCATGAAAGAATTTATCAAGGCCTAGG
AAATAGGAGGTTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGC
AGAACCCCCTGGTGCTACCTTTCACAAGGCTCAAAGGAGTAGCACAAATT
GTGACTAGGTTGAAATCCTTACCTGTCATTAGCTGACCCTAGGCAGGGCT
GTTTTATCTTTACTGTAAATATTACATGGTTCCTGTAGGTCCTTTTGAAG
TCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCCATG
ACATCCTACCCCTTTGTTTTCTGTATTATATAAGACTGGTGTTCACTTTG
TGAAAATACACTCCAATTCAATACGTTCTCTTGTGTAGTATTTGTTTGTC
ATTCGCTGACTCCTTGCCCACCTGCAACTAGGGACCTGTTTCGCGCAGAT
AAAAGACCCCAAAAAAGGTCTTATTCTGGGCGCAATTCCCAAAGAAACAG
CTCCATTTCTGGCCATTGATCTTTTTCTTTTGCCAACCCCTGGTAACTTA
ATAAGGGAAATTGGCTATCCCTGCTTTAACGGTAACTAACTTCTAAATTT
TTTTCCCCAAAAATTTAAAAGCCCCCCATTGAATGTGTGGTTGAAATCCA
GGTAAAACAAATCCCCCCCAGACAGTGTTCTTTTATACCCACCAGAAGTT
CTTTGGATTAACCCTCCCCAACTTTTTATCTCTTTAAGGGAGGGAATGGA
AAAATAATTATTCCCCGGAATACTCGGCTTTGACTCTTCTCATGTGGCCC
CATTGGGCGTGTTATAATTGCTAGCGAAGTCCTCCCCTCTAATATGTTCC
CTTACCAGAATTATTTGTTNGTGTTATTGTGTGAC
TTTTTTTAACATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCCCTTAACTTTTACCTTGTAAGACTTGACAACTG
TTCCAATCTTTGACATCAACTGGCACTGATGTAACCTGACAGCAAGACTC
TTTTTGCTAATAGCAAGCACTGCTTGTACCCCGGCTTCTGATCGCTAAGC
TCTTACTACCTAACAACCATGGAATTCAGTGAATGTTTGAAACTTGCAAC
CATTGCCCAGTCAAATGCACTGAACACAGACCTATGCAATGTACAAGAAA
ATGGTTATAACAAATAACACATTTCTGCTTTATGGGGCAACCTGGCTTCA
ATTAAAGCCCATGTGCCCAGTGCTAAATGATATAATTAATAACAGTGATC
AAGGCTGAAATATTTCAAACGATCACCTTCATTTTATACTTCTTAGAAGG
ACAGAACCTTAAAAAGCAAGAACACAAGTTACATCCGTCTATATCTCTAT
GCAGAGAAGTCCACATATTTCTGCCTACAACACATTCAATTGTAAAGGGG
ATTATTTACTTAAGCCAGAAACTCAATAGGAAGTTGATCAAGATCAGAAG
AATTATCAGTGTTGACCATATTAGCGGCTCTTCTGTTGATGTGCTAAAAC
ACCATAACCAAGGCAACTTATAAAAAGATCTTATTTTAACGTACAGTTCC
AGAGAATTAGATTCAATAATACTGGGACTGCAGGGCAGCAAGCATCAGTC
TCACAGGGTGTAAAGGAAGCTAAAAAATCATTTCTTAAACCTCAAGCATG
AAGGATAGAGAGCAAACCAGCAAAAAGAAGGTTTACATTCCCAAAGCCCA
TAACCCGTGCCACACTTAGGCCATCCAAGACCCCCCCCCAACCTTTTCCA
GGTTAACATCACCCAACCGGTAACCATCTTTTTCAATATGCCTGAACCCT
AAGGTGAATCATTTTCCCATTTCCAACCCCCTAACAGCTTGTCCTTTCAA
AGGGACATTCTTTAAATTAAAATTCTCCTATTCCCAAATCTAAAAATTCC
TTTTGGCACTTCCAACTCAAAAATTTTATTTAAGCAATTTTTAAGACAAA
AATTTCTCAAATCTTCACCGAAAAATGTGTGAAAGAATTTCCCTGTTAAC
ATTCCTGCCTAAATCTCCAATATAAAATCTATCTCTACAACAATTTTTTC
AATTTGGTCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_h23.g1 MSMg01no124_h23.g1 CHROMAT_FILE:
MSMg01no124_h23.g1 PHD_FILE: MSMg01no124_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:40 2005
         (328 letters)



>mm_chr4_16403567_16404294
          Length = 728

 Score =  588 bits (304), Expect = e-172
 Identities = 322/332 (96%), Gaps = 8/332 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcactgatgtaacctgacagcaagactctttttgctaatagcaagcactgcttgta-- 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 528 tggcactgatgtaacctgacagcaagactctttttgctaatagcaagcactgcttgtaga 469

                                                                       
Query: 59  --ccccggcttctgatcgctaagctcttactacctaacaaccatggaattcagtgaatgt 116
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ag----ggcttctgatcgctaagctcttactacctaacaaccatggaattcagtgaatgt 413

                                                                       
Query: 117 ttgaaacttgcaaccattgcccagtcaaatgcactgaacacagacctatgcaatgtacaa 176
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 412 ttgaaacttgcaaccattgcccagtcaaattcactgaacacagacctatgcaatgtacaa 353

                                                                       
Query: 177 gaaaatggttataacaaataacacatttctgctttatggggcaacctggcttcaattaaa 236
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaaaatggttataacaaatagcacatttctgctttatggggcaacctggcttcaattaaa 293

                                                                       
Query: 237 gcccatgtgcccagtgctaaatgatataattaataacagtgatcaaggctgaaatatttc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcccatgtgcccagtgctaaatgatataattaataacagtgatcaaggctgaaatatttc 233

                                           
Query: 297 aaacgatcaccttcattttatacttcttagaa 328
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aaacgatcaccttcattttatacttcttagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)