BAC Information

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BAC

Clone NameMSMg01-124K20
Chromosome4 (Build37)
Map Location 138,549,787 - 138,675,192
singlet/doubletdoublet
Overlap geneTmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186
Downstream geneHspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124K20.T7 (MSMg01no124_k20.b1)MSMg01-124K20.TJ (MSMg01no124_k20.g1)
ACCAG333969AG333970
length1,2241,229
length of high quality
(start - end)
318 (77 - 394)266 (133 - 398)
definitionCHROMAT_FILE: MSMg01no124_k20.b1 PHD_FILE: MSMg01no124_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:05 2005CHROMAT_FILE: MSMg01no124_k20.g1 PHD_FILE: MSMg01no124_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,549,787 - 138,550,104)(138,674,927 - 138,675,192)
sequence
NGGCCCCGCATTGGGCCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
ACAATCTGTGTATAGAAAGATCTCCACAGGTGGACTTAGCTGTATGAGCA
TCACTGCCTTTGCTGTTGTTGACTTATTTCATTTTTGACGGTGCTAGAGA
TGGAAGCTGAGGCCTTGCACACACCCACCTGCACAGATTTTCACTAGATC
CTTTTGTGCTGTTTAAACTGTCAACTTGACACAACCTAGAGCCACCTAAG
AAGAGTCTCAATGAGGAACTATCTAGATCACATTGACTTGTGGGCATATC
TGTGGAGGACCGACTCCATGGTTGATATAGGAAGACCCAGCCCACTGTGG
GCAGCACCATTCCCTCAACAGGAGATCCTGGATAGCAAAGAGAGCTCCAT
TATATAGCTGAGAACAAGGAAACAAGCAAGGATCTGTGGACTTGTTCTTT
TTCTGACCCCCCCCCGTAGATCTGGTGCTGTAAGTACCAGAAGAGACCTC
CCTGAGCTGATCAGCTGTAACCTGGTGAATTGTAAGCCAATGAAACCTTC
TTTCCCTAGGCTGCTTTTTGTCAGGGTGTTTCCTCATAGCCATCGAAGTG
AACAGAGAGCAACCATTAGGGCAATATGTCAGTAGATAGTGCCTCCCATG
AGTCATCCTTTGCCCAGGACAGATAGTAACATTGTTAATCTTTCCAACAA
CCCTAAGAAGTACGTTTCATCACTATCACAACTATGTCACATATTCAAAA
TCACACACAGAGAGGCGGAGTAACCGATCCCAGGACCACACCAGCAGGTG
GCATTGCTGGTGGCAGTGCTCTTTTACCCTGTGTCTATAGGACACCCTAG
TTCCTTTAGTCTAAGACTTCCCCAACATCCCGGCAGGTTAGACTACTCTG
TTTGCCCTGAACCACCCCTGTGTACTCCCGGATTGGCGTCTGTTCACCCT
CTTAACCATTCCTGAAAACATCCCCGGTCCAACCCCTCCTGCAACTTTGG
ATCAGTTCCCCGGGAGGACCCACGGGTAAATTGAAATTCCTATCATTCTT
ATTCACGGCCATTTTTCGAAAATAACATTTTCACGCCTGGCCCGCCTAAT
GCCTTAAACTGCTCCCCGGCCCCTCCTTACCCTTTAAATAACACCCCTCG
GGCCGGTCCCCCGCTGCTCCCCACACTTTTATTTTGTCCTTTACATAATA
TAACAGCGGGATATTTCGCTACCT
TTTTTTCCGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTAAGGGGTTGTTTTCATTTCTGTTTTTCAA
AACAGGGCCCCTTTTGAGTAGCCCTGGNTGCCCTAAAACTTGATCTATAG
ACCAGGCTGGCCTTGAACTCAGAGATCTACCCGCCTCTCAACAAGTATTA
AAGGTGTGCACCACAAACACCCAGTTTTTATTCTTTTTTAATGTTGGGGA
TTCTTAGCAGTGCATACAGCTGACGGAGGACTTGTTTGCAGCACATGGGA
GCTCTGAATCATAAGAACTATGGTAGGGTGTTTGAAAGGGAGTTTTACTC
ACGGCAACTAAGTACAGGAAAGAACAGCTCCATCAGCACTCACAGTGGGA
ATTTGAAGTAAGATTATGAGGTACCCTGAAAAGCCATTAAAATCGCCAAG
CTTTACTAGTCACACAGTAGTATCACTGAGATATGGAGCAGGATATGACG
CTGTATACCATGGGGGGAAGTGTGAGCAGGTAGGATTACTTTGCCTGAGA
GTCTGTTTCTTTGCTAAGAAGAATGGGAACCATGGCCACACAGGCATTAC
ATGAATGTTCCTAAACCCAAACTCAGGAGCAACTCAGATGTCTACCTGCT
GTTGTGTAGTGAACCAACAGCTGTGAACACGCTTTACACCAAGAAACTCA
CAATGGGAAGGACTCACTGCTGATATCTGTGACATCACAGTTCCAGTTAT
ATATAAAATCCTAGAAAAGATACTCTAATATAATGAAAGGAAGTAGGTGG
ATGATTTCAGGAGGCTAAGGGGAGAGGGAGGAATGTACATAGAGAGTACA
AGTGATGGTGGTATTTGCTGATTTCAGTGCTGGCTGCACAGGCATGTTCA
GCCACCGGAACTTCTAAAGTTTGACACTTTTTCCCCATGCATCCATGATT
ACATGCCAGGCCTGGTGTGTGCAAGTCCAAGGCAGGTTGGCCATGATGAA
TTTGTGTAAAGTTGTGAAATCTTCCCCGGCCTCTTCCTTTTTACTAGGAT
AAGGAAAATTGGTTCTTAATGTAATTTGGGAAAAACTCTGCCCCCCAATT
CTTTGTCTTTATGGTGGGTCGCTATAATATATTATTTTCCCCCTACAAAT
GTATTGTCTGCTGGTTTTCAATCCTGCTCTCCTAAACTTGTGTAAATCAA
TACTTTTACTCATCTAGATTTTTTTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_k20.b1 MSMg01no124_k20.b1 CHROMAT_FILE:
MSMg01no124_k20.b1 PHD_FILE: MSMg01no124_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:05 2005
         (318 letters)



>mm_chr4_138549587_138550304
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtggacttagctgtatgagcatcactgcctttgctgttgttgacttatttcattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtggacttagctgtatgagcatcactgcctttgctgttgttgacttatttcattttt 260

                                                                       
Query: 61  gacggtgctagagatggaagctgaggccttgcacacacccacctgcacagattttcacta 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gacggtgctagagatggaagctgaggccttgcacacacccacatgcacagattttcacta 320

                                                                       
Query: 121 gatccttttgtgctgtttaaactgtcaacttgacacaacctagagccacctaagaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccttttgtgctgtttaaactgtcaacttgacacaacctagagccacctaagaagagt 380

                                                                       
Query: 181 ctcaatgaggaactatctagatcacattgacttgtgggcatatctgtggaggaccgactc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ctcaatgaggaactatctagatcacattgacttgtgggcatatctgtggaggactgactc 440

                                                                       
Query: 241 catggttgatataggaagacccagcccactgtgggcagcaccattccctcaacaggagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggttgatataggaagacccagcccactgtgggcagcaccattccctcaacaggagat 500

                             
Query: 301 cctggatagcaaagagag 318
           ||||||||||||||||||
Sbjct: 501 cctggatagcaaagagag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no124_k20.g1 MSMg01no124_k20.g1 CHROMAT_FILE:
MSMg01no124_k20.g1 PHD_FILE: MSMg01no124_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:05 2005
         (266 letters)



>mm_chr4_138674633_138675298
          Length = 666

 Score =  507 bits (262), Expect = e-148
 Identities = 265/266 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaacttgatctatagaccaggctggccttgaactcagagatctacccgcctctcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctaaaacttgatctatagaccaggctggccttgaactcagagatctacccgcctctcaac 501

                                                                       
Query: 61  aagtattaaaggtgtgcaccacaaacacccagtttttattcttttttaatgttggggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagtattaaaggtgtgcaccacaaacacccagtttttattcttttttaatgttggggatt 441

                                                                       
Query: 121 cttagcagtgcatacagctgacggaggacttgtttgcagcacatgggagctctgaatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttagcagtgcatacagctgacggaggacttgtttgcagcacatgggagctctgaatcat 381

                                                                       
Query: 181 aagaactatggtagggtgtttgaaagggagttttactcacggcaactaagtacaggaaag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 aagaactatggtagggtgtttgaaagggagttttactcacggtaactaagtacaggaaag 321

                                     
Query: 241 aacagctccatcagcactcacagtgg 266
           ||||||||||||||||||||||||||
Sbjct: 320 aacagctccatcagcactcacagtgg 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)