BAC Information

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BAC

Clone NameMSMg01-125C21
Chromosome4 (Build37)
Map Location 123,940,930 - 123,941,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125C21.T7 (MSMg01no125_c21.b1)MSMg01-125C21.TJ (MSMg01no125_c21.g1)
ACCAG334340AG334341
length709747
length of high quality
(start - end)
280 (33 - 312)247 (90 - 336)
definitionCHROMAT_FILE: MSMg01no125_c21.b1 PHD_FILE: MSMg01no125_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:08 2005CHROMAT_FILE: MSMg01no125_c21.g1 PHD_FILE: MSMg01no125_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGCCAA
GAGTCCAGGCTTCACCTAAGTGGAATCTCTGAACAGACTGCTCTCTACCC
AGTTACAGGATGTTACATCACCAAGGGCCAGGTGCTCTCCCTCTCCTGGT
CTCTCTCTGTCTTCTGCCTCTGACATAACCACAGGCATCAATCAATGAAA
ACTCATCCAGAAAGATGAATCCACATAGTAGAGGTTAGTCTTAGTTCAGG
CACGCACTGTTTCTGAAGAATGGTGATTCCACAGTATTTAAACTAATAAT
CTTGCTATCCCGTTTATTGGTAAGAGTCTCTCCTGAGGTCCCAGAGGTTT
TTTTTGGTTTCCCCCCCCCCCCAGTTGTCAGTTAGTTATAGTAGTTTAGA
TTGGTTACTAAATAAAAAAACAAAAACACCTGGGGGGGCGGGGTTATGTT
CACTGTATGCTATGCCCCCACCCTGAACCCATAGTACATCCGGCTCAAAC
TCTTTTCACCTTGTGATCCGGCTCATACCTGTGAACCTAGTATCCATGTG
ATTCATCCGAACTGGTCAATTCCACACACTCCCCCCCCCTTTTTGCCTAT
GTCTCTCTGTCCAACCGGCTATCTATCCCCCTTCCGTTTCTTTCTCTCCC
ACACCCTACTCACTCAATTTTTTTCTTTCCTTACTTTACCCATAATTTTA
ACCCGCCAT
NAATTCTTCNTACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGTGGTGTTTG
GATCGAGTCTTTAAGCATTCATTGGGTTTAGTATTCTCTGGATCTCCTGG
ATCTACGTTTTGGTGTTTGCCATTAATTAAAAAAAACAAAAACAAAAACA
AAAAAAACCCTTGGTCATTACTGCTTCCAATATTTCTTCAGCTTTGTTCC
TCTTCACCTTCTGGCATTAAAATCATGCATATAATGCAAGTAGCATTGTA
TGGACTCAACAGGTTATATTTGGAAATATACATGTGTATGCAAATGCATA
TATGTATACAGTTACAGCTGATGAATTTTTTTACCATCCCCCGCCAACAG
AGGAGGCCAGGTATATGGGGGGTTTGGAGGGAGCGAAAGAAAAAAAAAAA
ACGCTATCGTGGGGGGGGGCCCCTCACCTCTATACCCATACACCCTTCAA
CTTTACACCTCTCTCACCTACCACTCCCATTCCCCCCTTAATCCCACCCC
CCCACTTCCCTCTTCCCCCCCCCCCCTCCCTCCACTCTCTTACCTATTCC
CCCTAATCCACACCCCCACACCCCCCATAAACCCCCCTTACCTCTCTCCC
ATACCCCCCCCATATCCACCATACCATTTTTCCTCCTTCCCCCACTCATA
TTTATCTCCCCCTCCACCTCTCCTCCCCCCCCACCCTCCCACACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_c21.b1 MSMg01no125_c21.b1 CHROMAT_FILE:
MSMg01no125_c21.b1 PHD_FILE: MSMg01no125_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:08 2005
         (280 letters)



>mm_chr4_123940727_123941406
          Length = 680

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagccaagagtccaggcttcacctaagtggaatctctgaacagactgctctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagccaagagtccaggcttcacctaagtggaatctctgaacagactgctctc 263

                                                                       
Query: 64  tacccagttacaggatgttacatcaccaagggccaggtgctctccctctcctggtctctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacccagttacaggatgttacatcaccaagggccaggtgctctccctctcctggtctctc 323

                                                                       
Query: 124 tctgtcttctgcctctgacataaccacaggcatcaatcaatgaaaactcatccagaaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgtcttctgcctctgacataaccacaggcatcaatcaatgaaaactcatccagaaaga 383

                                                                       
Query: 184 tgaatccacatagtagaggttagtcttagttcaggcacgcactgtttctgaagaatggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaatccacatagtagaggttagtcttagttcaggcacgcactgtttctgaagaatggtg 443

                                                
Query: 244 attccacagtatttaaactaataatcttgctatcccg 280
           |||||||||||||||||||||||||||||||||||||
Sbjct: 444 attccacagtatttaaactaataatcttgctatcccg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)