BAC Information

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BAC

Clone NameMSMg01-125I11
Chromosome4 (Build37)
Map Location 76,516,024 - 76,552,169
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667845, Ptprd, LOC667858, LOC667862
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125I11.T7 (MSMg01no125_i11.b1)MSMg01-125I11.TJ (MSMg01no125_i11.g1)
ACCAG334594AG334595
length689711
length of high quality
(start - end)
313 (37 - 349)286 (91 - 376)
definitionCHROMAT_FILE: MSMg01no125_i11.b1 PHD_FILE: MSMg01no125_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:36 2005CHROMAT_FILE: MSMg01no125_i11.g1 PHD_FILE: MSMg01no125_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,516,024 - 76,516,330)(76,551,886 - 76,552,169)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAG
ATATTGTGATAAGACTTTCTTAAAATATTTATCATAATAAGACTATGCAG
AAATCATAATGCCTCTATACTTACTAGGACTGTGGTATTTGTAAGAGAAA
CTGGAAAAATTAGATAGCTAGGTCATTAACATATTTGATGCACAATTATG
AAGACAGGAGTTCAAATATTTAGCCCTCATATAAAAGACAGATGTGCATG
CATCTAAAACTTCAACATTAAAAAGTAATAAGGAGAGAGTTGTATCCCTG
AAGTGTACTGGCTCCCTAATCTAGCAAAGTCAATAACTTCAAAATCCTTT
GTTTGATCTTCCCGCCCCAATATGGTGGTGAATAATTGGAGGAAGCCACC
CATTGTGGACAAAAAAAACAATATGATGTGGGCGCAGGTGTTGATGTACT
GTTACAGGTACACACACATCCACAAGAACACATACACATCATAAACACAC
ACACACATGCACGCAGACACACACACGTGAACACATTTGCACAGGTAAGT
GCATGTGCGTGCACATACTTGAAAATATTTTTGAACAAAGAGAAATTTAA
GTAATATGATACTTACACTGATGACTTATGTGTTTGAAAAAATCAGAGAG
AGCACAAATAAACAACTTAGCGATAATGCCATAAGATCT
NNACTTACNNNNTTAACTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATATTTTT
CCCTTAATGAGTTGTTTTTCTCCAATTTAAGGTGGAGACCATCCACTGTA
CTAAGAAGATTCCAAAATGTTTATAAGCTGCCATGCCCATGATGCTAGTA
TGGTACCCACATGGTTCCAGGGTTGAATTTAAATAGCAATCTGAGATCTT
CCTCATTCCAGTTTACTTGTTTAATTCTCAGAATCTTACTTGTAAAATGG
GTGCATTAGAGCTGATTCTCCATATCTTACCCAATGCTATAGAGATCAAA
TGAATGCTTTTGATGTGATGAAATTATTTGGGATGCCTTTGAGCTCTGAG
GCTTTAATTAAATTTAATGATTAAAAAAAAAAACCTTAAATTGAAAACAC
ATTTTCAGCGGAGAGCTCTTTTACTTTCATTTTTGCAAATAAGCGAGTCT
CGAACTACAATTGGATCCATTTGCTTTTAGCTACCATTCCTAATGTGTCT
TAAAATCTTATATTGACACAGGGGTAGAAGTTAATGTACAAGGTTAGGGA
CATTGTTTACTGATTACTGTTTAATTAATTATACATTCTATTTTACCTCT
ATGGGACACATTCAATGAACACTATTCTTGCATAGCACAGGTCAATGGGC
ATAAATGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_i11.b1 MSMg01no125_i11.b1 CHROMAT_FILE:
MSMg01no125_i11.b1 PHD_FILE: MSMg01no125_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:36 2005
         (313 letters)



>mm_chr4_76515820_76516532
          Length = 713

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagatattgtgataagactttcttaaaatatttatcataataagactatgcag 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcctagatattgtgataagactttcttaaaatatttatcataataagattatgcag 264

                                                                       
Query: 65  aaatcataatgcctctatacttactaggactgtggtatttgtaagagaaactggaaaaat 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatcataatgtctctatacttactaggactgtggtatttgtaagagaaactggaaaaat 324

                                                                       
Query: 125 tagatagctaggtcattaacatatttgatgcacaattatgaagacaggagttcaaatatt 184
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 325 tagatagctaggtcattaacatatttgatgcacagttatgaagacaggagctcaaatatt 384

                                                                       
Query: 185 tagccctcatataaaagacagatgtgcatgcatctaaaacttcaacattaaaaagtaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagccctcatataaaagacagatgtgcatgcatctaaaacttcaacattaaaaagtaata 444

                                                                       
Query: 245 aggagagagttgtatccctgaagtgtactggctccctaatctagcaaagtcaataacttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggagagagttgtatccctgaagtgtactggctccctaatctagcaaagtcaataacttc 504

                  
Query: 305 aaaatcc 311
           |||||||
Sbjct: 505 aaaatcc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no125_i11.g1 MSMg01no125_i11.g1 CHROMAT_FILE:
MSMg01no125_i11.g1 PHD_FILE: MSMg01no125_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:36 2005
         (286 letters)



>mm_chr4_76551686_76552371
          Length = 686

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatatttttcccttaatgagttgtttttctccaatttaaggtggagaccatccactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctatatttttcccttaatgagttgtttttctccaatttaaggtggagaccatccactgta 425

                                                                       
Query: 61  ctaagaagattccaaaatgtttataagctgccatgcccatgatgctagtatggtacccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctaagaagattccaaaatgtttataagctgccatgcccatgatgctagtatggtacccac 365

                                                                       
Query: 121 atggttccagggttgaatttaaatagcaatctgagatcttcctcattccagtttacttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atggttccagggttgaatttaaatagcaatctgagatcttcctcattccagtttacttgt 305

                                                                       
Query: 181 ttaattctcagaatcttacttgtaaaatgggtgcattagagctgattctccatatcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttaattctcagaatcttacttgtaaaatgggtgcattagagctgattctccatatcttac 245

                                                       
Query: 241 ccaatgctatagagatcaaatgaatgcttttgatgtgatgaaat 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccaatgctatagagatcaaatgaatgcttttgatgtgatgaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)