Query= MSMg01no125_m08.b1 MSMg01no125_m08.b1 CHROMAT_FILE:
MSMg01no125_m08.b1 PHD_FILE: MSMg01no125_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:55 2005
(643 letters)
>mm_chr4_24559235_24560278
Length = 1044
Score = 1207 bits (624), Expect = 0.0
Identities = 639/644 (99%), Gaps = 1/644 (0%)
Strand = Plus / Minus
Query: 1 gcctctggcaccctcagtatacccattgcttactcccaagtggcttgctatggaagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gcctctggcaccctcagtatacccattgcttactcccaagtggcttgctatggaagtgct 785
Query: 61 tgggacgaagaatcagcttaaacaatacatttcttaattgtgtcatgggttcgccttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgggacgaagaatcagcttaaacaatacatttcttaattgtgtcatgggttcgccttgag 725
Query: 121 agcagacgctcagctgtctctcactgtccttttaattgtagcttactcttcttttggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agcagacgctcagctgtctctcactgtccttttaattgtagcttactcttcttttggagg 665
Query: 181 atcctgtttcttgttcgtggaaagctctaaaatgtgctcctctgttacaggtggggtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atcctgtttcttgttcgtggaaagctctaaaatgtgctcctctgttacaggtggggtgac 605
Query: 241 aaacaccgcacagtatcagaacagactgatggtatacgaacctaaccaggtaaggtgttc 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 604 aaacaccgcacagtatcagaacagactgatggtatatgaacctaaccaggtaaggcgttc 545
Query: 301 ctaagaattcattaccgtaattaaaatgcgttttaaagatctccacaggaactgttcatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctaagaattcattaccgtaattaaaatgcgttttaaagatctccacaggaactgttcatc 485
Query: 361 agagtgccactgtatgcaccttcagctacctgggggaaagaaagcattttg-ggggaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 484 agagtgccactgtatgcaccttcagctacctgggggaaagaaagcattttgcggggaaag 425
Query: 420 ccttcggttcctcattggtattgcacagcttcggcccctctagtttcatgctacatgtaa 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccttcagttcctcattggtattgcacagcttcggcccctctagtttcatgctacatgtaa 365
Query: 480 tgccacagagctttgcatatggtagagaggattttgattatagcgatgtccttctgtaag 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 364 tgccacagagctttgcatatggtagagaggattttgattgtagcgatgtccttctgtaag 305
Query: 540 ggatgccatttggggtgggagacatccctatgaccttgttagtctcaaatcaaataatgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggatgccatttggggtgggagacatccctatgaccttgttagtctcaaatcaaataatgc 245
Query: 600 catttgacttaatacagccaatggtgtcctatgtctaggacaaa 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 catttgacttaatacagccaatggtgtcctatgtctaggacaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_m08.g1 MSMg01no125_m08.g1 CHROMAT_FILE:
MSMg01no125_m08.g1 PHD_FILE: MSMg01no125_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:55 2005
(631 letters)
>mm_chr4_24477482_24478509
Length = 1028
Score = 1181 bits (611), Expect = 0.0
Identities = 625/631 (99%), Gaps = 3/631 (0%)
Strand = Plus / Plus
Query: 1 agtccctacctgtgatttcctgtgtgctgaagaccagtaagaccaaatgttaggtagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccctacctgtgatttcctgtgtgctgaagaccagtaagaccaaatgttaggtagttg 260
Query: 61 ccaggatttatgtagtcaattccacatgctgagtttgtttccagtgattcagcagtgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggatttatgtagtcaattccacatgctgagtttgtttccagtgattcagcagtgcca 320
Query: 121 cacgtctgttccaggagagtctgtgtgacttgtaaccacatctctgctttctcacaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgtctgttccaggagagtctgtgtgacttgtaaccacatctctgctttctcacaggga 380
Query: 181 agcttagccttgtgtaaaaattaaacctgcttttatcttctcatcatatcttacattttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttagccttgtgtaaaaattaaacctgcttttatcttctcatcatatcttacattttg 440
Query: 241 aatgatattctgaatctattatctagaaaactgggtgtcagaattttttatcatttaaac 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aatgatattctgaatctattatctagaaaactgggtgtcagaaatttttatcatttaaac 500
Query: 301 atgtaaacttgcctagggagtaggatgtacttattcccataagagtaatgggtgaggata 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtaaacttgcctagaaagtaggatgtacttattcccataagagtaatgggtgaggata 560
Query: 361 ctgatttaaattttcatatatgcatattttgtcaaacttacttttatgacattatagttt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ctgatttaaattttcatatatgcatattttgtcaaacttacttttatgacat---agttt 617
Query: 421 gaaaatcactgaagttagaaaattctttattcaaactggtatttcagcttttctattttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaaaatcactgaagttagaaaattctttattcaaactggtatttcagcttttctattttt 677
Query: 481 aatataaagaatcaaagtgaaagaaatagattaaaattgctgcctgttcatattagctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatataaagaatcaaagtgaaagaaatagattaaaattgctgcctgttcatattagctat 737
Query: 541 ggtctttgatattaaatactttcttcatctgctcaagtagctattaatacagtatttaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggtctttgatattaaatactttcttcatctgctcaagtagctattaatacagtatttaca 797
Query: 601 tttatttaggaaagaggctactggcttaagg 631
|||||||||||||||||||||||||||||||
Sbjct: 798 tttatttaggaaagaggctactggcttaagg 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1028
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1018
Effective search space: 632178
Effective search space used: 632178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
