BAC Information

Click to search

BAC

Clone NameMSMg01-126A15
Chromosome4 (Build37)
Map Location 63,228,016 - 63,228,375
singlet/doubletsinglet
Overlap gene6330416G13Rik
Upstream geneRgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1
Downstream geneLOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126A15.T7 (MSMg01no126_a15.b1)MSMg01-126A15.TJ (MSMg01no126_a15.g1)
ACCAG334965AG334966
length714754
length of high quality
(start - end)
380 (44 - 423)148 (69 - 216)
definitionCHROMAT_FILE: MSMg01no126_a15.b1 PHD_FILE: MSMg01no126_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:16 2005CHROMAT_FILE: MSMg01no126_a15.g1 PHD_FILE: MSMg01no126_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCCATCTCAACCCGGAACACCTCAGTGAACTGGGGCCAAAGGGGCTGGC
CTAAGATGTGAACCTGATGGCCCAAGTTCATTCCTCAGAATCCAGAAGAA
GGTAGAGGGAAAGATCAGACTCCACAAAGTTGTCTTCTGCCTTCCGTACA
TGAATCCTGGCACACACACACACACACACACACACACACACACACACACC
AATATATACATGAGAATAATCATCATCATAAGTACGATTCCCCCAAAGCA
GAAAAATCCTCTAAGAACATATAACAATAGACACACAAGCTCTTCACTAA
TCAAGACAATAATCTAAGAAAGCTGCGGGGTTTCAGGAGATAGTTCAGTG
TGTGGATCTGCTGCCCAAGCATGAGGACAGAATTTTGGATTGCTAGCAGC
TGCGTTAGCTTGGTGCTTTGGGGAAATGCCTGGCAGCCAATGTAGGTAGA
CCAGCAAGCTCCATGTTCAGTGATATACCCTGTTGCCTATAAGTAAGCTG
GATAACAAACCATCAAGACATCAACCTCCACATGCACAGGCATGCAAGTA
TAAATACATATTCATGCACACGCCACACGATAAAAGTACGGGAAGATAGA
GACTATGCATAGATAGAACGCAAGTATAGGCGGAGTACACTCAGCTCGCC
TGCCGCACGTTTTC
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCTCCCGCTTTAGGAGTTAGGAAGCTGAAC
TAGAACGTCTAATCATAATTATGTTGTCACTGAATTATACAGCGAAGAGG
TTGGAAACCACTGCTAAAACAGATTGTATAGGTGGTGTGCTGCTCACCTA
TAAACCCAGCACTCATGAGTTATCGAGAGGCCGGTCGTTGTCTGCTCGTT
CCTTGCCTTCCCTGTTTTATTTTTTCGCCCTTCTGTTCTCCTTTTCTTTC
CCTTACCACCCGCGTCCCGTTTTATCACTTTACCCGTTCCCCGCTGCCTC
CTTCTCGCCCACTGCCCATATTTTCTCCTACTTCTGTTCTTTTTTTACTT
GGCCTGTGCTTCCCCCACCCCCTTTCCCTTCCTCCTTTTCCATCCCTCTC
CCTCTTCCCTCTCTGCCCTCTTTTCCCCCCTTTCCTTCCTTCCCTCCCCC
CCTTTTTTCTCCCCTCCTCTCTCCTCCCATTTCACAACTCACTTCCATCC
CCACCCATTTTCTCTCCCATTCTTCCTTTTTCCCCCTCTCCGCCCCTCCC
TTTCTTATTCCCCCCCTTTTCCCCTCTCTCCTCCTCTTTTTCCTCCTCCC
CTTTCCTTTTCCCCCATTTTCCCTTCCCTCCCCCTTCCCTCTTTCCCTTC
CCCCCTTTTCCATCCTTCTTCCCTCTCCCTCCTTTTTTTTTTTCCTTTTT
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_a15.b1 MSMg01no126_a15.b1 CHROMAT_FILE:
MSMg01no126_a15.b1 PHD_FILE: MSMg01no126_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:16 2005
         (380 letters)



>mm_chr4_63227606_63228385
          Length = 780

 Score =  600 bits (310), Expect = e-176
 Identities = 351/382 (91%), Gaps = 28/382 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatctcaacccggaacacctcagtgaactggggccaaaggggctggcctaagat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||        
Sbjct: 770 gaattccatctcaacacggaacacctcagtgaactggggccaaaggggctgg-------- 719

                                                                       
Query: 65  gtgaacctgatggcccaagttcattcctcagaatccagaagaaggtagagggaaagatca 124
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 --------------ccaagttcattcctcagaatccagaagaaggtagagggaaagatca 673

                                                                       
Query: 125 gactccacaaagttgtcttctgccttccgtacatgaatcctgg------cacacacacac 178
           |||||||||||||||||||||||||||||||||||||||||||      |||||||||||
Sbjct: 672 gactccacaaagttgtcttctgccttccgtacatgaatcctggcacacacacacacacac 613

                                                                       
Query: 179 acacacacacacacacacacacacacaccaatatatacatgagaataatcatcatcataa 238
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 612 acacacacacacacacacacacacacaccaacatatacatgagaataatcatcatcataa 553

                                                                       
Query: 239 gtacgattcccccaaagcagaaaaatcctctaagaacatataacaatagacacacaagct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtacgattcccccaaagcagaaaaatcctctaagaacatataacaatagacacacaagct 493

                                                                       
Query: 299 cttcactaatcaagacaataatctaagaaagctgcggggtttcaggagatagttcagtgt 358
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 492 cttcactaatcaagacaataatctaagaaagctgtggggtttcaggagatagttcagtgt 433

                                 
Query: 359 gtggatctgctgcccaagcatg 380
           ||||||||||||||||||||||
Sbjct: 432 gtggatctgctgcccaagcatg 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)