BAC Information

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BAC

Clone NameMSMg01-126B07
Chromosome4 (Build37)
Map Location 116,323,581 - 116,323,990
singlet/doubletsinglet
Overlap geneAkr1a4
Upstream geneLOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp
Downstream genePrdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126B07.T7 (MSMg01no126_b07.b1)MSMg01-126B07.TJ (MSMg01no126_b07.g1)
ACCAG334996AG334997
length704707
length of high quality
(start - end)
414 (42 - 455)337 (68 - 404)
definitionCHROMAT_FILE: MSMg01no126_b07.b1 PHD_FILE: MSMg01no126_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:19 2005CHROMAT_FILE: MSMg01no126_b07.g1 PHD_FILE: MSMg01no126_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CGGGCCACTTCCCCTTCTCCACAGCCTGTGCTCACTGCCAAGGTGAGTTC
TTCCTGCTGCTGACTCGTCTTTTTCTCCTGAGTTAAAGGCGAGGGTCCTT
CAGTACCACAGGTCAGGGCCAGGATTGAGCGAATGGCGCCAGCACGTCGA
GGGATGCGATTTAGTTTCGCGTTTGAGCACTTCCTCCTATTCTGTTCTCA
GATAACGTGTTTCTGGACCTCGGTTTCCTCAGAGTTGGAAGGAGCAGGGA
AATCATTAGTGCTGTAGGTAGGACTGGGATAAACCTTTGAATGTGTCTGG
TGCATATCTCGTGCTTTTGCCATCTCTTTGTTTGGTCATCTGCTCGAAAT
TTCTAGGCGCTCCCCCTTTCCTAATGGCGGTACAGGGATATTCCTAGGAA
GTGGCGGAAGTGGGGAGAGATTAGCTTGCTCAAGCCTCTGCCTTAGGTTT
GAGAAAATTTGAACATCTCCTGTCGCTACGGAGCCTTTTTAAGTGAAAAT
ACTTGAATCTTCACATTACCCGAGCCTACCATTAATGGACTCTACTGTTT
TAGACTTTTTCGTAGGAACGCATGTACCTGCTCAGTTTCTGATAAGCCCT
GTTAATTTTCCCGGTNTGCCCTTTTGCAGTGATACGGTTTTATTCCTTGT
ATGA
TGCTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTTAAGACCTCTGCTTGTTTCGGTTGGCTCC
GCTCGCTCGCTCTGGTCAACCCCGCTTGCTCCATCCCAAAGATTTATTTA
TTATTAAGTATAGTGTAGCTGACTTCAGTCACCCCAGAAGGGGGTGTCAG
ATCTCATTATGGATGGTTGTGAGCCACCAAGTAGTTGCTGGGATTTGAAC
TCAGGACCTTCGAAAGAGCAGTCAGTGCTCTTAGCGCTGAGCCATCTCGC
CAGCCTGTGAACGAGTGTTTTGTTGGCATGTGTATACACATACTTGCATG
CAGTACTTATGGAGATAAGAGGGCATTGGATCCCTAGAACCAGAGTTACA
GATGCTTACCANCCACTGTGTTTGTGGCAACTGAAGACACGCCCTCAGGA
ATGCAGCAGTAAGTGCTTTTAACTTTGGAGCTCTCTCTCTAGCCCTCCAT
TACTCTTACAGTTAGGCGGGGGAACAATGACCACAAATCCTTTATTTGGT
CTAGTTTTGAGAATATATTATGTTCTCCTTAACAAAATTGCGCATTGGAG
TCCCGCGGAGAAGACTCAGTGTTTAAATGTGTATTGCTACCTTTGCCCCC
GGTACCGGAGTTCAATCCTCTTTACACCCCTTAAATGGTAAAAAATTACC
CGAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_b07.b1 MSMg01no126_b07.b1 CHROMAT_FILE:
MSMg01no126_b07.b1 PHD_FILE: MSMg01no126_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:19 2005
         (414 letters)



>mm_chr4_116323377_116324190
          Length = 814

 Score =  723 bits (374), Expect = 0.0
 Identities = 401/410 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgggccacttccccttctccacagcctgtgctcactgccaaggtgagttcttcct 64
           |||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaattcgggccactttgtcttttccacagcctgtgctcactgccaaggtgagttcttcct 555

                                                                       
Query: 65  gctgctgactcgtctttttctcctgagttaaaggcgagggtccttcagtaccacaggtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctgctgactcgtctttttctcctgagttaaaggcgagggtccttcagtaccacaggtca 495

                                                                       
Query: 125 gggccaggattgagcgaatggcgccagcacgtcgagggatgcgatttagtttcgcgtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggccaggattgagcgaatggcgccagcacgtcgagggatgcgatttagtttcgcgtttg 435

                                                                       
Query: 185 agcacttcctcctattctgttctcagataacgtgtttctggacctcggtttcctcagagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agcacttcctcctattctgttctcagataacgtgtttctggacctcggtttcctcagagt 375

                                                                       
Query: 245 tggaaggagcagggaaatcattagtgctgtaggtaggactgggataaacctttgaatgtg 304
           ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 tggaatgagcaaggaaatcattagtgctgtagggaggactgggataaacctttgaatgtg 315

                                                                       
Query: 305 tctggtgcatatctcgtgcttttgccatctctttgtttggtcatctgctcgaaatttcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tctggtgcatatctcgtgcttttgccatctctttgtttggtcatctgctcgaaatttcta 255

                                                             
Query: 365 ggcgctccccctttcctaatggcggtacagggatattcctaggaagtggc 414
           |||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggcgctctgcctttcctaatggcggtacagggatattcctaggaagtggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)