BAC Information

Click to search

BAC

Clone NameMSMg01-126G10
Chromosome4 (Build37)
Map Location 135,560,618 - 135,585,047
singlet/doubletdoublet
Overlap geneTceb3
Upstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445
Downstream geneRpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G10.T7 (MSMg01no126_g10.b1)MSMg01-126G10.TJ (MSMg01no126_g10.g1)
ACCAG335224AG335225
length704703
length of high quality
(start - end)		630 (43 - 672)525 (75 - 599)
definitionCHROMAT_FILE: MSMg01no126_g10.b1 PHD_FILE: MSMg01no126_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:46 2005CHROMAT_FILE: MSMg01no126_g10.g1 PHD_FILE: MSMg01no126_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,584,575 - 135,585,047)(135,560,618 - 135,561,142)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTAAGACCTTGTGGTTTCACTGCAAAAGAAATCATCTATGTTGAAA
TGCTATCAAAAATTATTGCCAAATATTAATTGCACAAAGGAGTTTGATTA
TGACAAAATAGATACAATTATAATTTGCTTGTTTTCTTATGCTTACTTTA
TATCCGTAAGTGTTTTGCCTGCATGTATGTCTGTACACCATTTGGATGCC
TGGGACACGCAGAAGCCAGACAAAGGCATGGAATTTCCTGGGAGTGGAGT
TACAGATGGTTGTGAGCCACTGTGTGGATGCTGAGAATTAAACTCAGGTC
CTCTAAGAAGAGCAGCCAGTGCTCTTAACTGCTGAGTCATCTCTTCCAGG
AAATCTATTTTTAAAGCTATATGTCTGATGTGATCGTTATCTTTCTTACA
TATTAAGCTACTGCAGAAGCTCTAATAACTAGTAAACTTTTCCGTTGATC
CAGGCCTGGAATGTAGCTCAGTGGCAAGGGAGCTAACCTAGCTTCAGAGA
CGGTCTAGGTTCAAACAGGAAAAACACAGGCAAACAAGCAAAATCTCCTG
CCTCGTAAATTCTCTTCCATCTACAGGGCTTGCCCAATGTATCATTGATT
TGATAGCAGCGTATTCTTCAGCCACGACACCAGCACTCTGATGAGAGAAC
ACTG

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGAGAACAAGAGAATAAAGTGCTG
GCATTTCAACCCCCCAAAATCACACTCAGAGCTACAAAAGCCCTGCTATG
TCTGTTTCCCCACAGTGCAGGGAAAGGCAAAATAAGGGCAGGTGTGTATG
TAAAATACTGAATCAGAAACTAGGATTATAAAACTGCTGAGGTCCTACAT
AAATTCATATCTTAAGGGTCTGTCCTCCAGCAAGCCTGAAAACAGGGAAG
AGGAGTGTGATTTGAAGATGATGCACAAAGGACTATAGACTTTGCAAACA
GCCTTCTTTAGCAAACACTACTGAAGAAAGAAAAGCGCCCATCAAGGAAC
TCTGAGGGTTTAACAGGGAGGCTCGCTGGAGGACAGGCATTCTGGCACTC
TCACTCCTGGCCCTGTATATGGGCTTGGAGCAACACACTGGCTCTGAAGG
TGCCCTTTGACCAGTGTCTACTCAGAAGAGCTGACCCAGGACAAGAATGG
CTTTTGCTAGGCTCATCTAACTTTAATAAAGGACCTGGAAAGTAAAAGGC
TAAATATAGAGGACTAAAAGAAAAAAACAAAAAAAGGAAAAAAAAAAAAA
CCCCTGGGTTATTATAAATACATCTGGGGGCAATATTTATTATTAAAACT
ATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g10.b1 MSMg01no126_g10.b1 CHROMAT_FILE:
MSMg01no126_g10.b1 PHD_FILE: MSMg01no126_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:46 2005
         (630 letters)



>mm_chr4_135584018_135585047
          Length = 1030

 Score =  876 bits (453), Expect = 0.0
 Identities = 468/473 (98%)
 Strand = Plus / Minus

                                                                        
Query: 158  atatccgtaagtgttttgcctgcatgtatgtctgtacaccatttggatgcctgggacacg 217
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1030 atatccgtaagtgttttgcctgcacgtatgtctgtacaccatttggatgcctgggacacg 971

                                                                        
Query: 218  cagaagccagacaaaggcatggaatttcctgggagtggagttacagatggttgtgagcca 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 970  cagaagccagacaaaggcatggaatttcctgggagtggagttacagatggtggtgagcca 911

                                                                        
Query: 278  ctgtgtggatgctgagaattaaactcaggtcctctaagaagagcagccagtgctcttaac 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  ctgtgtggatgctgagaattaaactcaggtcctctaagaagagcagccagtgctcttaac 851

                                                                        
Query: 338  tgctgagtcatctcttccaggaaatctatttttaaagctatatgtctgatgtgatcgtta 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  tgctgagtcatctcttccaggaaatctatttttaaagctatatgtctgatgtgatcgtta 791

                                                                        
Query: 398  tctttcttacatattaagctactgcagaagctctaataactagtaaacttttccgttgat 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  tctttcttacatattaagctactgcagaagctctaataactagtaaacttttccgttgat 731

                                                                        
Query: 458  ccaggcctggaatgtagctcagtggcaagggagctaacctagcttcagagacggtctagg 517
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  ccaggcctgggatgtagctcagtggcaagggagctaacctagcttcagagacggtctagg 671

                                                                        
Query: 518  ttcaaacaggaaaaacacaggcaaacaagcaaaatctcctgcctcgtaaattctcttcca 577
            ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 670  ttcaaaccggaaaaacacaggcaaacaagcaaaatctcctgcctcataaattctcttcca 611

                                                                 
Query: 578  tctacagggcttgcccaatgtatcattgatttgatagcagcgtattcttcagc 630
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  tctacagggcttgcccaatgtatcattgatttgatagcagcgtattcttcagc 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no126_g10.g1 MSMg01no126_g10.g1 CHROMAT_FILE:
MSMg01no126_g10.g1 PHD_FILE: MSMg01no126_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:46 2005
         (525 letters)



>mm_chr4_135560418_135561342
          Length = 925

 Score = 1007 bits (521), Expect = 0.0
 Identities = 524/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagaacaagagaataaagtgctggcatttcaaccccccaaaatcacactcagagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagagaacaagagaataaagtgctggcatttcaaccccccaaaatcacactcagagcta 260

                                                                       
Query: 61  caaaagccctgctatgtctgtttccccacagtgcagggaaaggcaaaataagggcaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagccctgctatgtctgtttccccacagtgcagggaaaggcaaaataagggcaggtg 320

                                                                       
Query: 121 tgtatgtaaaatactgaatcagaaactaggattataaaactgctgaggtcctacataaat 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatgtaaaatactgaaccagaaactaggattataaaactgctgaggtcctacataaat 380

                                                                       
Query: 181 tcatatcttaagggtctgtcctccagcaagcctgaaaacagggaagaggagtgtgatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatatcttaagggtctgtcctccagcaagcctgaaaacagggaagaggagtgtgatttg 440

                                                                       
Query: 241 aagatgatgcacaaaggactatagactttgcaaacagccttctttagcaaacactactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgatgcacaaaggactatagactttgcaaacagccttctttagcaaacactactga 500

                                                                       
Query: 301 agaaagaaaagcgcccatcaaggaactctgagggtttaacagggaggctcgctggaggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagaaaagcgcccatcaaggaactctgagggtttaacagggaggctcgctggaggac 560

                                                                       
Query: 361 aggcattctggcactctcactcctggccctgtatatgggcttggagcaacacactggctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcattctggcactctcactcctggccctgtatatgggcttggagcaacacactggctc 620

                                                                       
Query: 421 tgaaggtgccctttgaccagtgtctactcagaagagctgacccaggacaagaatggcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaggtgccctttgaccagtgtctactcagaagagctgacccaggacaagaatggcttt 680

                                                        
Query: 481 tgctaggctcatctaactttaataaaggacctggaaagtaaaagg 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctaggctcatctaactttaataaaggacctggaaagtaaaagg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |