BAC Information

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BAC

Clone NameMSMg01-127B19
Chromosome4 (Build37)
Map Location 89,599,756 - 89,600,045
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127B19.T7 (MSMg01no127_b19.b1)MSMg01-127B19.TJ (MSMg01no127_b19.g1)
ACCAG335747AG335748
length710714
length of high quality
(start - end)
460 (46 - 505)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no127_b19.b1 PHD_FILE: MSMg01no127_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:45 2005CHROMAT_FILE: MSMg01no127_b19.g1 PHD_FILE: MSMg01no127_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACAATTTGCGGCGCTAAACGACTCCTATATTTCGAGAATCCGCGGAA
TTCATGAAATTCTTACACAATGGATGGATCATCCTAAGTGAGGTAACCCA
ATCACAAAAGAACACACATAATATGCACTCACGGATGACTGGATATTAGC
CCAGAAGCTCAGAATACCCAAGATACAATTTGCAAAACACATGAAACTCA
AGAAGAAGGAAGACCAAAGTGTGGATAGTTCGGTTCTTCTTAGAAGGGAG
GACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCAGAGCAGAGAC
TGAAGAAATGACCACCCAGAAACTGTCCCACCTGGGGATCCATCCAATAA
AAAAACCACCAAACCCAGACACTATTGCAGATGCCAACAAGAGCTTGCTG
ACAGGAGCCTGATATACCCGCCTCCTGAGAAACTCTGCCTGTGCCTGACT
AATACACAAGTGGATGTTCACAGCCATCCATTAGATGGAGCACTGGGTCC
TCAATGAAGGAGCTAGAGAAAGTACCCGAGGAGTTGAGGGGTTTGCAGCC
CCATAGGAGGAACAATAATATGAACTAACCAGTATCCCCAGAGCTCCCTG
GAACTAAACCACCAATCACAGAGAACACACAGAGGAACTCATGGCTTCAG
TTGTATATGTAGCACGCGATGGCCTACTTGGTCATCATTGCGAGGAGAGG
CCGTTGCTCA
AAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATGGTAATGTTGAGTTCAGAC
AGACAAAAAACAAAAACAGCAATGAACATATGTGCATTTAATTGAAACTG
GGAGAGGCAGCACAGTGGTGGATATGCCTTCCTGTCAAGAAGGAGAATCA
GGCATGTCATGTTCAGTGTGGTGTGACATTTTTGGAGCCAAAAGCAGAGG
CTCAGGGGGAATTCATTCCCTCATATTAAAGATTACTTGAAACTGTACAG
TCAGGGTTTACAATCCATGTCCTGTTCCAAATAATGTCTCTGAGACTTAA
TTATTTATGAATAAATGTCTTCTCCACCCGCCCCCCCTCATCCCTGACGA
ACTTGTAACTTATATAACCCCCCCCCCTCAACTCTATGTGTGTCAGAATG
TTGGTTACCTCCCCTCAGTTTCACATTTCTGCCTTCCTCAGAGTTCGGGA
CAAGTCTGCTGCTCTTGATTCTTTACTAGAATCCCCTCTCTCTCTGTCAG
ATGCCTCACCTTCTACAACTGCCTCAGCTAATAGGCCATCAGCTTTTTAT
TGACAGATGGTGCTTCTACACTATACTTAAGAGATTCTTTCTACCTGAAA
CGTCTTATAATACCCGAAATATTACTATACTCCATTCTGCCCTTCCTGTC
TTATTCCTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_b19.g1 MSMg01no127_b19.g1 CHROMAT_FILE:
MSMg01no127_b19.g1 PHD_FILE: MSMg01no127_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:45 2005
         (292 letters)



>mm_chr4_89599556_89600247
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggtaatgttgagttcagacagacaaaaaacaaaaacagcaatgaacatatgtgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acatggtaatgttgagttcagacagacaaaaaacaaaaacagcaatgaacatatgtgcat 431

                                                                       
Query: 61  ttaattgaaactgggagaggcagcacagtggtggatatgccttcctgtcaagaaggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttaattgaaactgggagaggcagcacagtggtggatatgccttcctgtcaagaaggagaa 371

                                                                       
Query: 121 tcaggcatgtcatgttcagtgtggtgtgacatttttggagccaaaagcagaggctcaggg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 370 tcaggcatgtcatgttcagtgtggtgtgacatttctggagccaaaagcagaggctcaggg 311

                                                                       
Query: 181 ggaattcattccctcatattaaagattacttgaaactgtacagtcagggtttacaatcca 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 310 ggaattcattccctcatattaaagattacttgaaactgtagagtcagggtttacaatcca 251

                                                             
Query: 241 tgtcctgttccaaataatgtctctgagacttaattatttatgaataaatg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgtcctgttccaaataatgtctctgagacttaattatttatgaataaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)