BAC Information

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BAC

Clone NameMSMg01-127E19
Chromosome4 (Build37)
Map Location 31,224,113 - 31,224,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185, LOC619906, LOC100040864
Downstream geneLOC100040891, Map3k7, LOC665218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127E19.T7 (MSMg01no127_e19.b1)MSMg01-127E19.TJ (MSMg01no127_e19.g1)
ACCAG335880AG335881
length841721
length of high quality
(start - end)
121 (39 - 159)453 (66 - 518)
definitionCHROMAT_FILE: MSMg01no127_e19.b1 PHD_FILE: MSMg01no127_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:00 2005CHROMAT_FILE: MSMg01no127_e19.g1 PHD_FILE: MSMg01no127_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTACCTCTGAGCCCCATTTTTAAATGAGATTATTTGGTTTTCTGGAG
TCCACCTTCTTGAGTTCTTTGCAAAATTTATATTGCCTCAGTACAGGGTG
AACGCCAGGGCCAATAAGTGGGAGTGGGTGGGTAGGCGGAGTCTTCTTTC
CCCCCTCTTCTATTCCTTCCTCCTTTCTTTTTTTCTCTTCTCTTTCTTCC
TTTCTTTCTTTTTTTTTTTTTTCTCCCCCCTCTTTCTCTTTTCCTTTCTC
TTCTCACTTCCTTTCCCTTTTTCTTCTTTCTTTTTTTCTCCCTCTCTCCC
TTCCTTCCTTTTCCCTTCTCCTTTTTCCTTTTCCTTTCCCTTCCCTTTCC
CTCTTTCCCCCCTCTCTCTCCTTCCTTTTTTTTTTTTTCCCCCCTCTTTT
CCCTCTCCTTCTTTTTCTTCTTCTTCCTCCCCTCCCTCCTTTCTCTTTTT
TCTCTCCTTTCTTTCCCTCTTTCTTTTCCCTCTTTTTTCCTCCTCCCTTC
TCCATTTTTCTTTCCTTTTCCTCTCTTTTCTTTTTCCTTCCCCTCCTTCC
CTTTTCCATTTCTTTTTTTTTCTTTCCTTCCCCTTCCCTCCTTTTTTCCC
TTTCCTTTCATTCTCCCTTTTCCTTCCTTTTTTCCTCTCCTTCTTTTCCT
CCTCCTTTTTCTTCTTTTTTCCTTTCTCTTTTCCTCCTTCCTTCCCGCCC
CCTCCCTTTTTCCCTTTTTTCCCTCTCCTTTCTTTCTCCTTTCTCTTTTT
TCCCCCCCCTTCTTTTCCTCCCTCTTCTTCTCTCTTTCCTT
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTAATCTTCTTTAAGAGAGGTGAAATCTGTTGCT
GGGAGAAGTAAACAAAATACATGTTACCAAACTGGAGACACTGCACCCAG
GGCTTTCCGAGATGGAGGTCATTCTTTTACTGTCACTTGCATGAAGGCAA
AACGGCCACACATGTGGATGATCCTTGTCAAATAGAAATGGCTTTGCAGG
AAGAAGGAGGGTTAGGAATACCAAGAAGGGTCTGTTCCTGAAGCTCACAT
ATACAGCACATGCTTAATACAGAAGCTGTTTTTACATGGTGTCAGGCATG
AGTACTTGGTACAGGAGAATCCACTGGACATAGCCCTTACTTCGAGGAGA
CTACCCCCCCCACTCTCAGTGTACCTTAGTTGCTTCTACTTCTTTGTCGA
GACTGAGGGCTCAGGAGCTTCCTGCCTTCCATGTGAGCATGCATATTGGT
GTCACGTTTGTTCTGTTCTTGATTAGTTAGCCTTGACAGCCATTAATGAA
AACTAAGTCATGGATTTGAGTGCAACCAATATGAGAGCACGTGGGAAGGA
TCGTAGGTATGACACGTATGGCCCTCTTCTTACCCTTCCTCCCCCTTTTC
TTCCCCTTTTTCCCCCCTTTTTCCCCTTTTTTTCCACTTCATAAACTTCA
CCCTAATTCATTCCTCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_e19.g1 MSMg01no127_e19.g1 CHROMAT_FILE:
MSMg01no127_e19.g1 PHD_FILE: MSMg01no127_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:00 2005
         (453 letters)



>mm_chr4_31224105_31224957
          Length = 853

 Score =  772 bits (399), Expect = 0.0
 Identities = 441/455 (96%), Gaps = 4/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaatcttctttaagagaggtgaaatctgttgctgggagaagtaaacaaaatacatgtt 60
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 461 tgtaatcttctttaagagaggtgaaaactgttgctgggagaagtaaagaaaatacatgtt 402

                                                                       
Query: 61  accaaactggagacactgcacccagggctttccgagatggaggtcattcttttactgtca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 401 accaaactggagacactgcacccagggctttcccagatggaggtcattcttttactgtca 342

                                                                       
Query: 121 cttgcatgaaggcaaaacggccacac-atgtggatgatccttgtcaaatagaaatggctt 179
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 341 cttgcatgaaggcaaaacggccac-ctatgtggatgatccttgtcaaatagaaatggctt 283

                                                                       
Query: 180 tgcaggaagaaggagggttaggaataccaagaagggtctgttcctgaagctcacatatac 239
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 282 tgcaggaagaaggagggttaggaataccaagaagggtcagttcctgaagctcacatatac 223

                                                                       
Query: 240 agcacatgcttaatacagaagctgtttttacatggtgtcaggcatgagtacttggtacag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 agcacatgcttaatacagaagctgtttttacatggtgtcaggcatgagtacttggtacag 163

                                                                       
Query: 300 gagaatccactggacatagcccttacttcgaggagactaccccccccactctcagtgtac 359
           ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||
Sbjct: 162 gagaatccactggacatagcccttacttcgaagagactacttcccccactctcagtgtac 103

                                                                       
Query: 360 cttagttgcttctacttctttgtcgagactgagggctcaggagcttcctgccttccatgt 419
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 cttatttgcttctacttctttgtcgagactgagggctcaggagcttcctgccttccatgt 43

                                              
Query: 420 gagcatgcatattggtgtcac-gtttgttctgttc 453
           |||||||  ||||||||| || |||||||||||||
Sbjct: 42  gagcatgtgtattggtgt-accgtttgttctgttc 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)