TTTCATAATTTGCGGCCGCTATCGACTACTATTGTTCCAAGAGCGCGGAA
TTCCGTTTTTTTTCCTGAAAACAGCTTTTTTAGAATGATCAACGATTCTT
GCACATATCCGATGCCTGCTCGTATGTTGATTTTTTGATTGAACACATTT
TTATGATTCTTGCACCCGCTTATACAATTATTTCTGTGTAAACAAGAACT
GGTGTTACTAAAGACGATATATTAAACATTTTCAAACTTAACATCTAACT
TGAAATTTAACTCAATAATTTTCATATTTTTTTGTCTCCAACATCCACAT
GTTCTCATCAAGTTCACCTTCCGTTAAGACTATCTATTTGTTTTATTTAT
TATAAACTATACCCTCAATGACATATACATTTTAATTATTTACACTACTC
GACTGTTTGCATTTTTTACCATTTTTTTTCCCCTCCCTGTTTTCTTCCCC
CCCTCATTTGATTAAACATTTTCTATTTACCTTCTTTCTTCTTTCTCTCT
TTTTCTACTTTCTTTTCCCTTATTTCGTCCCACCTTCCGTTTTATATCTC
AAATATAATTTTATCATCACACAATAAAATAATACACTTTTTACTTCTTT
TCTTCGCATCTACATTTCCTTATCTTCCTCATTCTGTCAATTTTACCTTT
TCTCCACCTTTTCACCCACTTTTCAACTCCACACTACATTCTAAACTCTT
TTTTTCCTCTTCTCTTTTTTTTTTAACTCTACCTACCTATTTTTTATTTA
CCCCATTCTCTCATTTCACATCCAACTATTTATTTTGCCCCTGTTGCCCT
TCCTTTTCCTCCAACCATTAAATTGATATATAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTGACTACAACAATGATACATAAT
TCCAAATACAGCATCCTCAGTTGGGAGTTTGGTGACGAGGAAATGTTAAT
TACTTATAGAAATGCATGTATAAATTAAAGAAGGGGAAAACAGGAACCTT
AACACATGGCAGAATACTTACTCAGAGAGAAGTCAGCTGTTTGGATAAAT
GTTTTACAGTTTTGAGTGAAGCCTCTACAAGCAATAAAAATGCTAATTTA
AACCCAAGCAACCATTAAGATGTCTTTGTGACAGCAAACACATGCTGCTC
ATACAAGGATTTAGAGAGAATCAAAGAAGTTGCATCAAAGTCAATTCTAG
GGCAGAAAATGCAAAGAGGCTACAAATCAAGACTTCAGAGTTACCACCAG
GACCAGCGAGGTGGCTCAGTGGTTAAGAGTAAGTTCCGCTCTGACGGGGG
ACCTGAATTCAGTTCACAGCATCCCCACTGGACCCCTCACAGTCATCTAA
TATTGCCAGTTCCAGGGGCATCTGATGCCCCCAAAGCACCTGCACTCACA
TGTAGATAACCACCCCCTTACATACTTATACACACTATTTTAACTGGTTT
TTGCCCTTCTCTTTTCCTTTTTCCTTTCTTTCTTAGCAACAACACTTTTC
CCCA

Query= MSMg01no127_f08.g1 MSMg01no127_f08.g1 CHROMAT_FILE:
MSMg01no127_f08.g1 PHD_FILE: MSMg01no127_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:02 2005
         (508 letters)



>mm_chr4_19847939_19848847
          Length = 909

 Score =  880 bits (455), Expect = 0.0
 Identities = 493/509 (96%), Gaps = 7/509 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgactac-aacaatgatacataattccaaatacagcatcctcagttgggagtttggt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tattgactacaaacaatgatacataattccaaatacagcatcctcagttgggagtttggt 517

                                                                       
Query: 60  gacgaggaaatgttaattacttatagaaatgcatgtataaattaaagaaggggaaaacag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gacgaggaaatgttaattacttatagaaatgcatgtataaattaaagaaggggaaaacag 457

                                                                       
Query: 120 gaaccttaacacatggcagaatacttactcagagagaagtcagctgtttggataaatgtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaaccttaacacatggcagaatacttactcagagagaagtcagctgtttggataaatgtt 397

                                                                       
Query: 180 ttacagttttgagtgaagcctctacaagcaataaaaatgctaatttaaacccaagcaacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttacagttttgagtgaagcctctacaagcaataaaaatgctaatttaaacccaagcaacc 337

                                                                       
Query: 240 attaagatgtctttgtgacagcaaacacatgctgctcatacaaggatttagagagaatca 299
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 336 attaagatgtctttgtgacagcaaacacatgctgctcatacaaggattcagagagaatca 277

                                                                       
Query: 300 aagaagttgcatcaaagtcaattctagggcagaaaatgcaaagaggctacaaatcaagac 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 276 aagaagttgcatcaaagtcaattctagggcagaaaatgcaaagaggatacaaatcaagac 217

                                                                       
Query: 360 ttcagagttaccaccaggaccagcgaggtggctcagtggttaagagtaagttccgctctg 419
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 216 ttcagagttaccaccaggaccagcgaggtggctcagtggttaagagtacgttccgctctg 157

                                                                       
Query: 420 acgggggacctgaattcagttcacagcatccccactggacccctcacagtcatctaatat 479
           || ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 156 acagggaacctggattcagttcacagcatccccactggacccctcacagccatctaatat 97

                                        
Query: 480 tgccagttccaggggcatctgatgccccc 508
            |||||      || ||||||||||||||
Sbjct: 96  cgccag------ggccatctgatgccccc 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)