BAC Information

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BAC

Clone NameMSMg01-127F14
Chromosome4 (Build37)
Map Location 33,593,817 - 33,594,148
singlet/doubletsinglet
Overlap genenone
Upstream geneBach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127F14.T7 (MSMg01no127_f14.b1)MSMg01-127F14.TJ (MSMg01no127_f14.g1)
ACCAG335916AG335917
length749714
length of high quality
(start - end)
---331 (75 - 405)
definitionCHROMAT_FILE: MSMg01no127_f14.b1 PHD_FILE: MSMg01no127_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:03 2005CHROMAT_FILE: MSMg01no127_f14.g1 PHD_FILE: MSMg01no127_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAAATTGCGGCGCTATACGACTCCTATTTTCAGAAGAGCGCGTAANCA
TGGATATTTCCGAAAAGAGTGGAATTGAGATGTATTTGAAGGTATTAATA
TTATTTGTGGTTTTAATGCCCAGACAAAGTGTTTATATTAGATATGCTGA
TTAATGCTACGTGCTAGAGGACAAGAGTGCCTTGAGCTTATGGCCACCCT
CAACATATTTTGTCCCAAAAAAATTTAAAACTTTTTTACCTACACTATGC
CGACAATTTACTTAGGATTTTTCATTGTTTTGTATTTAAGACTCGACGTC
TCCTACCATACCCTCCCATTTTTATTTCTCGGGGGAATTGTATTTTCTTT
CCGCAACGTGCATTACTTATCCTCCGCACCGCATCAAATCTTGATATTTA
ACATGTTTTCCCCCCCCCCTTCTTCTTTGTACATTATGCCTACTTTCTGT
TCGCTCTTTCTCTTTCCACTTTCACCCTTTTTCCCTTATCCTCCTCCTAC
CTTTTGTGCCTTAAGTTTGTTTCATCCAATCCTTCCTACCATTTATCTCT
TTCCCCTACCCTGTGATTGATCCCACCACGTTCATTTCCTTTTCCCGCCT
GTCCNCCTTTTCCCCCCGCCACGTTACACAGCTGTTTCCCCACATTTTAT
ATCCACCCCCTCGCTTTTGATTTCCCCCTTCACCCTCCTCCATCCCCCCT
TTTTTTTCACCCTTCCCGTGCCTTATCCTCCAATGATATCTATATCACN
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCACTCAAGAATGAAAGCCATGCTC
TAAATGAACTTGAAAACTTTGATAGAGTGTGGACAGAAGTCATTGGACTG
CACCTGGGCCATTAGTATAGGTGGGAAGGGCAAGAAAGACTGGAAAAAAA
ATAATCATATGTGGGAGAGAAGAAAATCTAGAGGTCATAATGGCCTAGGA
GCCAAGCTCATGTTTGTGAACATCTCTGAGTCTGTGAAAATGGGACTTCA
TTTTGCTCTGTACTTTAAGCATCTCTGAAGTTTCTCATTGAGCAATGAAC
AGCTGTGCAACATACTGCCAGCAGACTGTTTATGTAAGTGCATTTGACCC
TATGCAGAGTACGGCGACCCCCACCTATGGAGATTAAAGCTTGCTGGATT
GGAGGCAAGGATGTGGAGGTACCAAGAGCAAACAGCTCTTAAGGCCTTTT
GTATCAAACAGAATAATGAAAGGAGCCAGCAGCTACAGGGAGATGGGGGA
TAAGGATAGGAGGGTTAGCTGCAGACTGAGATTACCGCTTTATTTCTAGT
GCATTTCTTTGGTTTAACAGTATAATACCCCCTATTACTGTGTTTCCTGC
CTACCCCCTATTGCCACCGTCACCTTCTCTCGATTCCACCCATAGAAGTA
TTCTTCAGCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_f14.g1 MSMg01no127_f14.g1 CHROMAT_FILE:
MSMg01no127_f14.g1 PHD_FILE: MSMg01no127_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:03 2005
         (331 letters)



>mm_chr4_33593617_33594348
          Length = 732

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%), Gaps = 1/332 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcactcaagaatgaaagccatgctctaaatgaacttgaaaactttgatagagtgtggac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 532 agcactcaagaatgagagccatgctctaaatgaacttgaaaactttgatagcgtgtggac 473

                                                                       
Query: 61  agaagtcattggactgcacctgggccattagtataggtgggaagggcaagaaagactgg- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 472 agaagtcattggactgcacctgggccattagtataggtgggaagggcaagaaagactgga 413

                                                                       
Query: 120 aaaaaaaataatcatatgtgggagagaagaaaatctagaggtcataatggcctaggagcc 179
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 412 aaaaaaaataatcatatgtgggagagaagaaaatcaagaggtcataatggcctaggagcc 353

                                                                       
Query: 180 aagctcatgtttgtgaacatctctgagtctgtgaaaatgggacttcattttgctctgtac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagctcatgtttgtgaacatctctgagtctgtgaaaatgggacttcattttgctctgtac 293

                                                                       
Query: 240 tttaagcatctctgaagtttctcattgagcaatgaacagctgtgcaacatactgccagca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttaagcatctctgaagtttctcattgagcaatgaacagctgtgcaacatactgccagca 233

                                           
Query: 300 gactgtttatgtaagtgcatttgaccctatgc 331
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gactgtttatgtaagtgcatttgaccctatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)