Query= MSMg01no128_c08.b1 MSMg01no128_c08.b1 CHROMAT_FILE:
MSMg01no128_c08.b1 PHD_FILE: MSMg01no128_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:08 2005
(586 letters)
>mm_chr4_77519332_77520317
Length = 986
Score = 1064 bits (550), Expect = 0.0
Identities = 576/586 (98%), Gaps = 4/586 (0%)
Strand = Plus / Minus
Query: 5 gaattctatcaatgactt--aaaacaaaacaaaacaaaaacaaaaac--aaaaaaaataa 60
||||||||||||||| || |||| |||||||||||||||||||||| |||||||||||
Sbjct: 851 gaattctatcaatgatttaaaaaaaaaaacaaaacaaaaacaaaaacaaaaaaaaaataa 792
Query: 61 acaaagaaccacacaaacccaaatttaatttttcaaatcatagagcaaataaggaattat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 acaaagaaccacacaaaccaaaatttaatttttcaaatcatagagcaaataaggaattat 732
Query: 121 aaaccagattaaagaatccaggccacagataggcactttatcctgtatggttgttttttc 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 731 aaaccagattaaagaatccaggccacagataagcactttatcctgtatggttgttttttc 672
Query: 181 ttaattatacgtgaaagttcacaccaaacaaacatttcaaacatacctgtgtcaactgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttaattatacgtgaaagttcacaccaaacaaacatttcaaacatacctgtgtcaactgtg 612
Query: 241 tcttaattttgattctaaatgagtaattattgaaaaatgagacttctacaatacagaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcttaattttgattctaaatgagtaattattgaaaaatgagacttctacaatacagaaac 552
Query: 301 taattcacagatggcactcactgcaacaatagatgcagaaaggagttttttgcttagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 taattcacagatggcactcactgcaacaatagatgcagaaaggagttttttgcttagcag 492
Query: 361 aaattaaataagaacaaataagaaaataggttttgcttatgtcattcaatgacaagtcca 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaattaaataagaaaaaataagaaaataggttttgcttatgtcattcaatgacaagtcca 432
Query: 421 tacagcccagaggtatgttctgtgatttggcagtaaatagaaaagtcattattcttgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tacagcccagaggtatgttctgtgatttggcagtaaatagaaaagtcattattcttgctc 372
Query: 481 ttatcttcataaagatttcatatttcaatgtagcgatgggcctgaaacaatggtacaaac 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 371 ttatcttcataaagatttcatatttcaatgtagtgatgggcctgaaacaatggtacaaac 312
Query: 541 taattccatgattgaatccgccctttggtgcaacattttatcgatg 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 taattccatgattgaatccgccctttggtgcaacattttatcgatg 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_c08.g1 MSMg01no128_c08.g1 CHROMAT_FILE:
MSMg01no128_c08.g1 PHD_FILE: MSMg01no128_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:08 2005
(178 letters)
>mm_chr4_77358521_77359101
Length = 581
Score = 306 bits (158), Expect = 7e-88
Identities = 176/182 (96%), Gaps = 5/182 (2%)
Strand = Plus / Plus
Query: 1 tcctgtttctg-atggctttatgtaagcatattccttgagtttc-atatttcttacaacc 58
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 201 tcctgtttctgtatggctttatgtaatcatattccttgagtttctatatttcttacaacc 260
Query: 59 tatctacaaa-cagaagtgtattagtcatactttctagtga-atgataaaatacttagta 116
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tatctacaaaacagaagtgtattagtcatactttctagtgatatgataaaatacttagta 320
Query: 117 gaaccataactacttggtaagagctaaaggtattgagtggggtttagaaaatgtttttca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gaaccataactacttggtaagagctaaaggtattgagtggggtttagaaaatgtttt-ca 379
Query: 177 ga 178
||
Sbjct: 380 ga 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 581
Length adjustment: 8
Effective length of query: 170
Effective length of database: 573
Effective search space: 97410
Effective search space used: 97410
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
