BAC Information

Click to search

BAC

Clone NameMSMg01-128L09
Chromosome4 (Build37)
Map Location 18,331,227 - 18,331,748
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L09.T7 (MSMg01no128_l09.b1)MSMg01-128L09.TJ (MSMg01no128_l09.g1)
ACCAG336909AG336910
length717716
length of high quality
(start - end)
507 (48 - 554)428 (71 - 498)
definitionCHROMAT_FILE: MSMg01no128_l09.b1 PHD_FILE: MSMg01no128_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:54 2005CHROMAT_FILE: MSMg01no128_l09.g1 PHD_FILE: MSMg01no128_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTATATCTTCATTCCCTTAAGATAATATCATATACTGAAAC
TTAAAAATGTTTCACAGAAGAAACAACACATCACTAGAGGATAGTGATCA
TAAAGCAAAGACACACACACACACACACACACAGAGTGGATGGATAATGC
GCAGATAAAGGACAAGATCTAGCATTCTATAAAACAGCACTTCTCACCTT
TCCTAATGTGGTGCCCTTTTGTCATAGTTCTTCATACTGTGGTCACCCCA
ACCATAAAATAATTTTTGTTGTTACTTCATAATAGTAATTTTGCTACTGT
TATGAATGGTAATGTAAAATCTGTGCTTTCCAAAGGTCTTAAGCAACTCT
TGTGAAAGAACCCCTTTATACCCTAATGGTGTTGTGACCTACAAGTTGAG
AACCACTGCTATAATGCAACATGGGCACTATAGTGTACAGTTGGCTATTC
TAGTTTTATAAACAAATGGATAAAGGGATTTTTGTAAATGTTCTCAATAC
AAATATAAATGAATGTTAATAATAATATTTTTCTAATTATCCTACTATTA
ATGCATACTGTATTAATTTATTGAGTTACCATACTGCATTTACTAATATA
CCTACGCACATGTTTTTGATAATGCTACAGACTATTTGTTCCGCTCGTCC
GTTTATCTGTCTGCTTG
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGGTGAGAAATCTCAAATGGCTAAGAAG
CACTTAAAGAAATGTTCACTGCCTTTAATCATCAGGGAAATGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACCTAAGATTCTACTCACACCAGTCAGAA
TGGCTAAAATCAAAAGTTCAGGTGGCAGCAAATGCTGGTGAGGATGTGGA
GAAACAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAACT
AGCCACTCTGGAAATCAGTCTAGTTGTTCCTCAGAAAATTGGACATAGTA
CTACCTGAGGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGC
TCCAATATATAACAGGGACACATGCTTCACTATGTCCGCCGCAGCCTTAT
TTATAATAGCCAGAAGCTGGAAAGAACCCTTATGTCCTTCAACAGAGGAA
TGGGTACAGAAAATATGGTATATTTATACAATGGAGTAATACTCAGCTAT
TAAAAACAATGAATTCATGAAATTCTTGGTCTAATAGAGGGAACTATAAA
ATATCATTGTGAGTGAGGTAATTCATTCATAAAATAACACACACGGTGTG
TAATTCCCTGAATAAGCCATTATTAACCAAAAAAGAAGCCTAAAATACCC
ATAATACAATTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l09.b1 MSMg01no128_l09.b1 CHROMAT_FILE:
MSMg01no128_l09.b1 PHD_FILE: MSMg01no128_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:54 2005
         (507 letters)



>mm_chr4_18331023_18331930
          Length = 908

 Score =  874 bits (452), Expect = 0.0
 Identities = 496/524 (94%), Gaps = 23/524 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttta---tatcttcattcccttaagataatatcatatactgaaacttaaaaat 61
           |||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttagatta--ttcattcccttaagataatatcatatactgaaacttaaaaat 262

                                                                       
Query: 62  gtttcacagaagaaacaacacatcactagaggatagtgatcataaagcaaag-------- 113
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||        
Sbjct: 263 gtttcacagaagaaagaacacatcactagaggatagtgatcataaagcaaagacacagac 322

                                                                       
Query: 114 ----------acacacacacacacacacacacagagtggatggataatgcgcagataaag 163
                     ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 acacacacacacacacacacacacacacacacagagtggatggataatgggcagataaag 382

                                                                       
Query: 164 gacaagatctagcattctataaaacagcacttctcacctttcctaatgtggtgccctttt 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacaagatctagcattctataaaacagcacttctcacctttcctaatgtggtgccctttt 442

                                                                       
Query: 224 gtcatagttcttcatactgtggtcaccccaaccataaaataatttttgttgttacttcat 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 443 gtcatagttcttcatactgtggtcaccccaaccataaaataatttttgttggtacttcat 502

                                                                       
Query: 284 aatagtaattttgctactgttatgaatggtaatgtaaaatctgtgctttccaaaggtctt 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatagtaattttgctactgttatgaatggtaatgtaaaatctgtgctttccaaaggtctt 562

                                                                       
Query: 344 aagcaactcttgtgaaagaacccctttataccctaatggtgttgtgacctacaagttgag 403
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagcaactcttgtgaaagaacctttttataccctaatggtgttgtgacctacaagttgag 622

                                                                       
Query: 404 aaccactgctataatgcaacatgggcactatagtgtacagttggctattctagttttata 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaccactgctataatgcaacatgggcactatagtgtacagttggctattctagttttata 682

                                                       
Query: 464 aacaaatggataaagggatttttgtaaatgttctcaatacaaat 507
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aacaaatggataaagggatttttgtaaatgttctcaatacaaat 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space:   446306
Effective search space used:   446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)