Query= MSMg01no129_b22.b1 MSMg01no129_b22.b1 CHROMAT_FILE:
MSMg01no129_b22.b1 PHD_FILE: MSMg01no129_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:26 2005
(667 letters)
>mm_chr4_47425820_47426887
Length = 1068
Score = 1247 bits (645), Expect = 0.0
Identities = 660/665 (99%), Gaps = 1/665 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgatggcctc-cccccacacagggcctcaaggcacttctggagtactactgt 62
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ggaattcttgatggccacagccccacacagggcctcaaggcacttctggagtactactgt 809
Query: 63 agtagcaggattacaggctgagcttcatgcctttactgtcctactagagacacagctggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 agtagcaggattacaggctgagcttcatgcctttactgtcctactagagacacagctggc 749
Query: 123 cactacttctgaggccaacttccactgccacttagctgtcaccctaatctttgcccagag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cactacttctgaggccaacttccactgccacttagctgtcaccctaatctttgcccagag 689
Query: 183 ctgacatcaaagcagggctaccagtaggggcaccccctaccccaatttgcagatcactcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctgacatcaaagcagggctaccagtaggggcaccccctaccccaatttgcagatcactcc 629
Query: 243 ctcataacacccagtgactcaaggaagtggaaaaatgtcacacagcttccatcaaccact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 628 ctcataacacccagtgactcaaggaagtggaaaaatgtcacacagcttccatcaatcact 569
Query: 303 tcattttaggtctcaaaagcagctcttaggtccaaaggctggaggtggggtcaggaacac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcattttaggtctcaaaagcagctcttaggtccaaaggctggaggtggggtcaggaacac 509
Query: 363 taagtctctgagccagggggcagcagaaaggcagagtgggaaaaacagagctgaagatat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taagtctctgagccagggggcagcagaaaggcagagtgggaaaaacagagctgaagatat 449
Query: 423 aagggactcaagttgtgtaagcctcagtaagtcatacttccttcatgctagcttaaccag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagggactcaagttgtgtaagcctcagtaagtcatacttccttcatgctagcttaaccag 389
Query: 483 ggtattgacaagataatatgtaatttgtcagaagatatgtcttagccatactacactttg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggtattgacaagataatatgtaatttgtcagaagatatgtcttagccatactacactttg 329
Query: 543 gggctggggggaagtctttgattggcaatagaaacaacagactgcactacaaaattacat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gggctggggggaagtctttgattggcaatagaaacaacagactgcactacaaaattacat 269
Query: 603 agaagtatttctctaattagatgtatatatagttatagccacattaaccatgacctatct 662
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaaatatttctctaattagatgtatatatagttatagccacattaaccatgacctatct 209
Query: 663 caatt 667
|||||
Sbjct: 208 caatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space: 695106
Effective search space used: 695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_b22.g1 MSMg01no129_b22.g1 CHROMAT_FILE:
MSMg01no129_b22.g1 PHD_FILE: MSMg01no129_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:26 2005
(292 letters)
>mm_chr4_47355945_47356636
Length = 692
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Plus
Query: 1 aaggaccaacagaacctcggaacacaaagactacgatgctcccgagcccttgcctggttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aaggaccaacagaacctcggaacacaaagactacgatgctcccgagcccttgattggttg 260
Query: 61 gtactctatgaatttctggagaacaaagagttcgaagcagggacagagaaataatgaaaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtactctatgaagttctggagaacaaagagttcgaagcagggacagagaaataatgaaaa 320
Query: 121 acatacagcatgtttctcatctctatgaccagatgtgttcagtgtacaggaggtctcatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatacagcatgtttctcatctctatgaccagatgtgttcagtgtacaggaggtctcatg 380
Query: 181 gcagaatgggggctgtttgcatggtgaccttgggcctgctaagctgcattgctaaggacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaatgggggctgtttgcatggtgaccttgggcctgctaagctgcattgctaaggacg 440
Query: 241 ggagagaagacatcttagccgaggcagtccttgaccaggcaggtcgaggc 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagagaagacatcttagccgaggcagtccttgaccaggcaggtcgaggc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
