BAC Information

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BAC

Clone NameMSMg01-129I01
Chromosome4 (Build37)
Map Location 34,442,231 - 34,442,597
singlet/doubletsinglet
Overlap genenone
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367
Downstream gene2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129I01.T7 (MSMg01no129_i01.b1)MSMg01-129I01.TJ (MSMg01no129_i01.g1)
ACCAG337495AG337496
length722708
length of high quality
(start - end)
374 (36 - 409)262 (59 - 320)
definitionCHROMAT_FILE: MSMg01no129_i01.b1 PHD_FILE: MSMg01no129_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:56 2005CHROMAT_FILE: MSMg01no129_i01.g1 PHD_FILE: MSMg01no129_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGT
ATTCTCCCGCTAGGTTCCCTTCCTTGCCTGAACTGTTGGCACACAGGGGC
AATTTTATACTCTAACCACAGTATTCCTTGGACTCTGGACCAATGCAGTT
GGCTCATTCACTTCGCTGCAATGCTTCTCCCGACTGTTGCATGTCTGAAG
ACGATTGTGCAATGATGCAGAAATGGATACAAGCACAGCTCCTTCTCTGG
CACTGGCTCTCGCTTCTCCAAAGCAGCAGCGAAGGCTGCTTTATCTCATC
TCATTTCCTTTATAATTTCATAATTATCATGGTGGAGATCTGAAGGACTT
CCTTTTTCCACTGTGGAGAAAGTAGCTTGCACTTTTCCGGTCTTTTGTCT
TTTCTTTCCACGATAGAGCTTTAATCAGCCCAGGCTGGCCTGAAAGTTTC
TCCTGAGTTCACCTCCCGGATACTGGATTTCAGGTATTCTTGGTCATGCT
GAACGCCAAATCCAGGGCCTCAAGCATGCTACCGCCGCCCCAACTGATCC
ACATCCCCAGCCACTGGTTGAGATTTTGACAGCTCCCAAGAGGAACTTGG
TCTGCCTGGGGCTGGGCGAAAGTTAATTCTACATTGCTCCCTATACCTTA
CATGAATACCGCCTCTTGCTCCTTCCATATTGCATAGCCTTTATCCTAAA
ATACCCAACCCGTGTCCTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAAGCTGGTCTTTTTTAGTAGGTGGCCTGAACAGTAGCTTGA
TGCTATCTCTTTACATGCCTTTTAGGGGATGAAGGCTCGCTCGTGTAGCT
CACACTGATCTGAGACTCACTGTGTGGCTGGTTACCTTGAACTCCTGAAC
CGCCTGCCTTGGGATTACAGGCATGCAGTACTATGCCTTGCTATCTACGC
TGTGAATGCTGGGCCACTGTAATAAAGTTCACATTCCTAGCCTGGTTCTA
AGTCACATGTAGAGCTGTGTCATTAGGACTCACTCATACCAGTTTACTTG
CTTAGTTCATAGAAGGCCGCCCTGGCCGCCTCTCCCTTCTTTCCTATCCA
CGCCCACACTGGTTTGGCTCCCTGTCCCTGCGCCCTGCTTAGGTACATCA
CTGTGCCCACTTTATGTGAGTGCACGCGAGGCCTCAGTTTTGTGTATTAG
GTACTTTAGCCCTCTCGCATATTTTGTGTATTCCAATCTTCATGAGTAAC
ATGGACGACTTATGTGCATCGCCCACTGTTTTGATCCCCTCACTACTGAC
CCAGAAATCTTTTGTGTTTTGAGCCCTTGTACTTTGAAAGCTGACTTGCG
CGACTGTCTTTCATATTTATGTTTCCTGGCGATCTTCCTAATCTCCTTTA
TTTTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_i01.b1 MSMg01no129_i01.b1 CHROMAT_FILE:
MSMg01no129_i01.b1 PHD_FILE: MSMg01no129_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:56 2005
         (374 letters)



>mm_chr4_34442027_34442799
          Length = 773

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggtattctcccgctaggttcccttccttgcctgaactgttggcacacagggg 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggtattctct-gctaggttcccttccttgcctgaactgttggcacacagggg 263

                                                                       
Query: 65  caattttatactctaaccacagtattccttggactctggaccaatgcagttggctcattc 124
           |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caattttatattctaagtacagtattccttggactctggaccaatgcagttggctcattc 323

                                                                       
Query: 125 acttcgctgcaatgcttctcccgactgttgcatgtctgaagacgattgtgcaatgatgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acttcgctgcaatgcttctcccgactgttgcatgtctgaagacgattgtgcaatgatgca 383

                                                                       
Query: 185 gaaatggatacaagcacagctccttctctggcactggctctcgcttctccaaagcagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaatggatacaagcacagctccttctctggcactggctctcgcttctccaaagcagcag 443

                                                                       
Query: 245 cgaaggctgctttatctcatctcatttcctttataatttcataattatcatggtggagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 cgaaggctgctttatctcatctcatttcctttataatttcataattatcatggtggaaat 503

                                                                       
Query: 305 ctgaaggacttcctttttccactgtggagaaagtagcttgcacttttccggtcttttgtc 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 ctgaaggacttcctttttccactgtggagaaagtagctcgcacttttccggtcttttgtc 563

                   
Query: 365 ttttcttt 372
           ||||||||
Sbjct: 564 ttttcttt 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 773
Length adjustment: 9
Effective length of query: 365
Effective length of database: 764
Effective search space:   278860
Effective search space used:   278860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)