CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCCAGGTTACATACCTCATACCGAACACTGAAGAAAATGTCTGCTA
TTTTTATTTTTCCCCTTTTCTTTTTTGTAATTTCCTTCGGGACCTCCTTT
GTCCTGAGTGGCCAGGGTCTTTGATAAGATGGTTGATCTTATTTCTGTTT
GCCCGTGTGTTGTAATCCTGCCTGACTGTTCTTGCTTAATGCAGAAACGA
AGTAAAGGTTCAGCTTGTGCTGGCCTCCCTCTCCAGTCATCTGCCATGGA
TCAGTTTTCAAGCCTGAGCCATGGTCCTCAGAGAGACCTCTGCCCATATA
CAGCCGTCCCGCTCACATCCCAGGCCTGGCAGTTCTAGCAAAGCCTTGAC
TTTTCTGAGCTGTTCAGGGCCAGAGACCATGTACTGAGCCCCTGTTCTAT
TTCTTGAGCAAAATGTGCATCTGGCACATCTACTTGAATCTCAGAAATAG
TCAAAGCTAAGTGAAGATGAGTGAGGAGTCATGTGGAGAAACAGGCTTCC
TGAAAGGAGGTCTCTTCTACTCTTCATCAGTTGTATCATCATTCCTTCCA
GAGTGGCCCTGAAGTGATGCTAGAAGACATGGCCTCCCTGGAGCTTGCGA
AAAACCTTAATTAAGGCTGTTGTTCAGATAGGTCAGCACATTTTGTGCTT
CATTGGAAGACTTCTGCTTCCCCATCCTATT

CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAGCTGTAGAATCGCCTCAC
CTGCAGATGGGGAGAAGCTCAAAGAGCCCCTAGCCTGAATCTTAATTTCT
CTACATGTATATTCATTTTGCCTTTAAAAAGAGCATTTTAAAAACAAACA
AACAAAAAACTTCAGTATATTGGAAAAAAAAACACAAGAATATATGAAAG
GAACTCAGTATTTCCAGTAACCTGGGATTTCTCCTGAGATTCACAAATTT
AATTTGATGACAAAAGAGAAGACCTAAGTACTTCACACTTTGGTTCAATT
TTACTGTCATTTCACTGACGTGGAACCATGTTTGTGGAGCACTGAAGAAT
GTGTTTGTTTGAACCAAAAGTGGAAAGCGAGCCATGGAAATCAATGCTGT
TGCTCTCTTTGCAAAGAGTTGGGTTTTGGTTTTGTTTTCTGTTTTTAAAC
CAAGCTGATGACTGATACAAGACTCAGTACAAGAAAAATGTGAGTGGAAA
TCAGTAATCTGTAGCCTCATATTAATACATCATTAATATTTCTCATGTTC
ACTTGGTTTCAGAGATTAGCCAGCCGAGTAGCTAATATTTGGCAGTGCAC
CCTGTTTCCTTCCCTAGAAATCTTAGGCATAAGAGTGTTTGTCCTTTGTT
TTGGATTTGGGTATATGTGTTCTTAATTTTGGTT

Query= MSMg01no129_k01.b1 MSMg01no129_k01.b1 CHROMAT_FILE:
MSMg01no129_k01.b1 PHD_FILE: MSMg01no129_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:06 2005
         (471 letters)



>mm_chr4_102182456_102183326
          Length = 871

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccaggttacatacctcataccgaacactgaagaaaatgtctgctatttttatttt 67
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattccaggttacacacatcataccgaacactgaagaaaatgtctgctatttttatttt 612

                                                                       
Query: 68  tccccttttcttttttgtaatttccttcgggacctcctttgtcctgagtggccagggtct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tccccttttcttttttgtaatttccttcgggacctcctttgtcctgagtggccagggtct 552

                                                                       
Query: 128 ttgataagatggttgatcttatttctgtttgcccgtgtgttgtaatcctgcctgactgtt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgataagatggttgatcttatttctgtttgcccgtgtgttgtaatcctgcctgactgtt 492

                                                                       
Query: 188 cttgcttaatgcagaaacgaagtaaaggttcagcttgtgctggcctccctctccagtcat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttgcttaatgcagaaacgaagtaaaggttcagcttgtgctggcctccctctccagtcat 432

                                                                       
Query: 248 ctgccatggatcagttttcaagcctgagccatggtcctcagagagacctctgcccatata 307
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctgccacggatcagttttcaagcctgagccatggtcctcagagagacctctgcccatata 372

                                                                       
Query: 308 cagccgtcccgctcacatcccaggcctggcagttctagcaaagccttgacttttctgagc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagccgtcccgctcacatcccaggcctggcagttctagcaaagccttgacttttctgagc 312

                                                                       
Query: 368 tgttcagggccagagaccatgtactgagcccctgttctatttcttgagcaaaatgtgcat 427
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgttcagggtcagagaccatgtactgagcccctgttctatttcttgagcaaaatgtgcat 252

                                                       
Query: 428 ctggcacatctacttgaatctcagaaatagtcaaagctaagtga 471
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctggcacatctacttgaatctcagaaatagtcaaagctaagtga 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no129_k01.g1 MSMg01no129_k01.g1 CHROMAT_FILE:
MSMg01no129_k01.g1 PHD_FILE: MSMg01no129_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:06 2005
         (519 letters)



>mm_chr4_102112954_102113872
          Length = 919

 Score =  957 bits (495), Expect = 0.0
 Identities = 513/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctaagctgtagaatcgcctcacctgcagatggggagaagctcaaagagcccctagcct 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 201 ccctaagctgtagaatcgcctcacctgccgatggggagaagctcaaagaggccctagcct 260

                                                                       
Query: 61  gaatcttaatttctctacatgtatattcattttgcctttaaaaagagcattttaaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatcttaatttctctacatgtatattcattttgcctttaaaaagagcattttaaaaaca 320

                                                                       
Query: 121 aacaaacaaaaaacttcagtatattggaaaaaaaaacacaagaatatatgaaaggaactc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aacaaacaaaaaacttcagtatattggaaaaaaaaccacaagaatatatgaaaggaactc 380

                                                                       
Query: 181 agtatttccagtaacctgggatttctcctgagattcacaaatttaatttgatgacaaaag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatttccagtaacctgggatttctcctgagattcacaaatttaatttgatgacaaaag 440

                                                                       
Query: 241 agaagacctaagtacttcacactttggttcaattttactgtcatttcactgacgtggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagacctaagtacttcacactttggttcaattttactgtcatttcactgacgtggaac 500

                                                                       
Query: 301 catgtttgtggagcactgaagaatgtgtttgtttgaaccaaaagtggaaagcgagccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtttgtggagcactgaagaatgtgtttgtttgaaccaaaagtggaaagcgagccatg 560

                                                                       
Query: 361 gaaatcaatgctgttgctctctttgcaaagagttgggttttggttttgttttctgttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatcaatgctgttgctctctttgcaaagagttgggttttggttttgttttctgttttt 620

                                                                       
Query: 421 aaaccaagctgatgactgatacaagactcagtacaagaaaaatgtgagtggaaatcagta 480
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcaagctgatgactgatacaaaactcagtacaagaaaaatgtgagtggaaatcagta 680

                                                  
Query: 481 atctgtagcctcatattaatacatcattaatatttctca 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgtagcctcatattaatacatcattaatatttctca 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)