BAC Information

Click to search

BAC

Clone NameMSMg01-129L15
Chromosome4 (Build37)
Map Location 114,022,357 - 114,022,530
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040607, LOC242627, LOC100040625, A630098G03Rik
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129L15.T7 (MSMg01no129_l15.b1)MSMg01-129L15.TJ (MSMg01no129_l15.g1)
ACCAG337662AG337663
length695708
length of high quality
(start - end)
186 (118 - 303)45 (76 - 120)
definitionCHROMAT_FILE: MSMg01no129_l15.b1 PHD_FILE: MSMg01no129_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:15 2005CHROMAT_FILE: MSMg01no129_l15.g1 PHD_FILE: MSMg01no129_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGATCACATTTCGGACGGAGCCGCGGAANNCNNN
CCTTTCCCGACGGGAAGANAAAACANANANNNNAAAAGCAGCAANTATAA
AGTTCTTTGNCCACTTCAGGGGCTGAAAAACATTCCTGGATTGAGGCCAC
AGCTTTTCCTTGGTCTCCTCCCTCGCCACAACCGAGGCCTAATGAATAGT
CACTCAGGCAGTTCTGCGTGCCATGTAACCAATATCTCCTATCAGTGGGT
CTTCGCAGGGATTTAATAAGCAGTCTGGGAGGATGGCCTGAGGAGGTCCA
CGTTTTTTATTTTTAACTCCGAGGCCTAAACAGCCTCAGCTTTTTTTTTT
ATTCCCCCTCCCCTATGAGGCCTGGTCCTCCCAGTAATGGATGGAAAATA
CGCGACAAAAAAGAAAAAAGCAATCAATTTTCCACCAATTAGCTGAGAGA
TGGCGGTCTCAGGAGGCAAGGAGATGGTTCCAGCATAAGAAACTGGTCTG
TAAGAAAGAAGATGCTAATAATGTATAAGGCCAAGCCTGACAATGAAAGG
CCTTGTGTTCCCAGGAACTTCTTCTCCTTCTCCAGGGTAAGCCTCCCCGT
GTATCCCTGTGAAGGAATTCTTGGCTACAGCGACTGTTTTTGTTTTTTTT
TTGGTATTTCTTTCCCCGATCTGTTAAACTGATAATCTCCCCCTC
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTAGAGAGGAGGAGTAAGATG
ATTCAAGGTAAAGGAACTTCAGACCAGAGGGCTGGGGGAACACCCCACTG
ACCTCTTCAGGAAAGAGCTAGCATGAATGTGGCTGGTATGTCCATAACCA
ACAAAAAAAAAAAAGGAGATAGTGTCAACCAAAGGGTATGGTGTACTTCA
ATTTGGGTCACCATGGCCCAGGTGTAAGTTCATGGTCATTTGTAAGGTTG
TCTGTAAATACATGAGAGACCATTTCAAGTTTAATGCTCAACTAAATGGA
GACAAGTATCTTCTTTTTTACCCCCCTCACATGGGCACCAGGAATAACAT
GGTGGGAAACAGTGGTCCCAATCCTGAAACCATTCCCAACGAGTGTTCAA
GGAGCTATGATAACCAATACAGACAAATCTCGACTATCATAGTTATGAAA
ATAGGAATTCAAGCTCCGTATCTACCTATCTCTCCTCACTTCTGTGTAGA
ACCTTATGGGGCCTTTCACAGAGGTAACCAGATATGATATGCTCACCCCA
TTGAATATTGGAGACAAAATTCTACCACAGACCCTTTCCTACTGCTCTTT
GAAAAATGAAGAAAAATTGGGCAATGCACAACTATGCATCATACCTGTAT
AATGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_l15.b1 MSMg01no129_l15.b1 CHROMAT_FILE:
MSMg01no129_l15.b1 PHD_FILE: MSMg01no129_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:15 2005
         (186 letters)



>mm_chr4_114022146_114022731
          Length = 586

 Score =  321 bits (166), Expect = 2e-92
 Identities = 172/174 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  aacattcctggattgaggccacagcttttccttggtctcctccctcgccacaaccgaggc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aacattcctggattgaggccacagcttttccttggtctcctccctcgccacaaccgaggc 271

                                                                       
Query: 72  ctaatgaatagtcactcaggcagttctgcgtgccatgtaaccaatatctcctatcagtgg 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 ctaatgaatagtcactcaggcagttctgcgtgccatgtaaccaatatctcctaccagtgg 331

                                                                 
Query: 132 gtcttcgcagggatttaataagcagtctgggaggatggcctgaggaggtccacg 185
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 332 gtcttcgcagggatttaataagcagtctgggaggacggcctgaggaggtccacg 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)