BAC Information

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BAC

Clone NameMSMg01-129P21
Chromosome4 (Build37)
Map Location 101,549,849 - 101,690,885
singlet/doubletdoublet
Overlap geneC130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536
Upstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362
Downstream geneLOC433739, Pde4b, Sgip1, Tctex1d1, Insl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129P21.T7 (MSMg01no129_p21.b1)MSMg01-129P21.TJ (MSMg01no129_p21.g1)
ACCAG337860AG337861
length701698
length of high quality
(start - end)
234 (120 - 353)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no129_p21.b1 PHD_FILE: MSMg01no129_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:35 2005CHROMAT_FILE: MSMg01no129_p21.g1 PHD_FILE: MSMg01no129_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,549,849 - 101,550,082)(101,690,600 - 101,690,885)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTACCTTTGCAAGAGCAGTCGGTGCTCTTACCCACTGAACCATCTCACCA
GCCCCCAATCATTTACTCCTGAGGGAGCAGAAAATACAACAGCAATCCAC
AACAACAGTGTTTTGGTCAGGAAGTCCACAAATACCTAAAACTCCGGTTC
CTAGAGATCGCCACCTTCTTCTGGACATTTGGAGTACTATATGCATGCCA
GGACATAACCACACACATACACACATTATTTTAAGTGTCTAAACAAAAAA
TAACTTAAAAAAATAGATTAATTAGACTTTACCAAAATTAAATTGTTTAA
ACAATTTTTTATGCCCCCCCCCCCGCAAGCGTTTTTCCTTCTAGAGTCTT
TGCAGGCACCACCTTATCAAAAGAATAGCCACTAGTTCCTATCTGTCTGT
GATATCAACGAGTGGGAAAATTATACAACAGCCTCCACAACTGAAGGTCT
GAGGAGGAAATTTGCTTTCCTAATATGACTTCCATTTTTCTGTTTTCTTC
TATCACTTTTATTATTTAAACCTTTGTTGTTGTTGTTGTTGTTGTTGTTC
TACAGAGGGTTTCTCCAGGAACATCTGGCTCTTCTGGATTTCACACTGTA
TACCAACCTGTTTTCTTACTCCCATATCTTTCTTGCTTTCTGCCTCACGA
T
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAGGAAGCTTGGCAGCTGTCTAGAAA
GTGTGTGTAGGACCATAGGCCCACTTCTGCTACAGCCAGCACTGCCTAGC
TGTGCTAGAGTCTGGATTTTGTACCCTTATTTAAAGTAGCAGTTGTTGCT
GTTGATTGTCATTTTATACCAACTAAGCTATTGCTCACATGATACCCCTA
TCCATCACATTAAGGGTCCAACATTCCTCCTTCAAAGTTCAGCTAAACTC
CAACTACTTATGAGAAATCTATATCGCTCTCTGCCCCCTGAACTTCTGTA
TGCCTATGTTTTTGCTGCCCCCTGGCGTGCTACATAAGTTATTAAATCAG
ATATTATCTGTTGCCTTATCATTCAAGACTATTGAAACAAGGATTGGGAC
AATGTCTTTGCTTTTCTCTCTATTTGTTGTGCTTGTATATGCTTCACCGC
GGGACTAGTTGAGACCCTAATCTATAACCAAGTGATTTTAGCTACAGAGA
ATGTCCAAGAGAGAGACATAGAGTCAAGAATCTTCCTCACAGTGTCCTCT
AGTGAGAATTTTGGTTTCTTTTAACAAAAATGAAATTTTTTTGAACAATG
TTTTCATTTTAATCCCGGGCATGGGGCCGTGGGTTTGCTTCACATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_p21.b1 MSMg01no129_p21.b1 CHROMAT_FILE:
MSMg01no129_p21.b1 PHD_FILE: MSMg01no129_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:35 2005
         (234 letters)



>mm_chr4_101549649_101550282
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagggagcagaaaatacaacagcaatccacaacaacagtgttttggtcaggaagtccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagggagcagaaaatacaacagcaatccacaacaacagtgttttggtcaggaagtccac 260

                                                                       
Query: 61  aaatacctaaaactccggttcctagagatcgccaccttcttctggacatttggagtacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatacctaaaactccggttcctagagatcgccaccttcttctggacatttggagtacta 320

                                                                       
Query: 121 tatgcatgccaggacataaccacacacatacacacattattttaagtgtctaaacaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgcatgccaggacataaccacacacatacacacattattttaagtgtctaaacaaaaa 380

                                                                 
Query: 181 ataacttaaaaaaatagattaattagactttaccaaaattaaattgtttaaaca 234
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacttaaaaaaatagagaaattagactttaccaaaattaaattgtttaaaca 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no129_p21.g1 MSMg01no129_p21.g1 CHROMAT_FILE:
MSMg01no129_p21.g1 PHD_FILE: MSMg01no129_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:35 2005
         (289 letters)



>mm_chr4_101690400_101691088
          Length = 689

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaagcttggcagctgtctagaaagtgtgtgtaggaccataggcccacttctgctac 60
           |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||
Sbjct: 486 agaggaagcttggcagctgtctagaaagtgtgtgtaggaccggaggctcacttctgctac 427

                                                                       
Query: 61  agccagcactgcctagctgtgctagagtctggattttgtacccttatttaaagtagcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agccagcactgcctagctgtgctagagtctggattttgtacccttatttaaagtagcagt 367

                                                                       
Query: 121 tgttgctgttgattgtcattttataccaactaagctattgctcacatgatacccctatcc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 366 tgttgctgttgattgtcattttataccgactaagctattgctcacatgatacccctatcc 307

                                                                       
Query: 181 atcacattaagggtccaacattcctccttcaaagttcagctaaactccaactacttatga 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 atcacattaagggtccaacattccttcttcaaagttcagctaaactccaactacttatga 247

                                                         
Query: 241 gaaatctatatcgctctctgccccctgaacttctgtatgcctatgt 286
           |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 246 gaaatctaaatcgctccctgccccctgaacttctgtatgcctatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)