Query= MSMg01no130_c02.b1 MSMg01no130_c02.b1 CHROMAT_FILE:
MSMg01no130_c02.b1 PHD_FILE: MSMg01no130_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:47 2005
(288 letters)
>mm_chr4_34566349_34567036
Length = 688
Score = 482 bits (249), Expect = e-140
Identities = 277/289 (95%), Gaps = 7/289 (2%)
Strand = Plus / Minus
Query: 4 ggaattcattatataggtttcc---ctgatctttgaactcatagagatcagtctgcctct 60
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 590 ggaattcattatatagg---ccaggctgatctttgaactcatagagatcagtctgcctct 534
Query: 61 aatttctaagtgctgagattacccgcat-ccccaccacacccagccccattttcactatt 119
|| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 533 aacttctaagtgctgagattaaaggcatcccccaccacacccagccccattttcactatt 474
Query: 120 ttcaaaactgaaaatagtaagattatcagtagtctctagtctgtgccttttctttctatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttcaaaactgaaaatagtaagattatcagtagtctctagtctgtgccttttctttctatt 414
Query: 180 tatttcttctttatcatgaaaagaggaatactcacctctccctctcacctgaaagttcta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatttcttctttatcatgaaaagaggaatactcacctctccctctcacctgaaagttcta 354
Query: 240 acaaaattcagggaacaaaggatacattgatactgagaattttatattc 288
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 353 acaaaattcagggaacaaaggatacattaatactgagaattttatattc 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_c02.g1 MSMg01no130_c02.g1 CHROMAT_FILE:
MSMg01no130_c02.g1 PHD_FILE: MSMg01no130_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:47 2005
(759 letters)
>mm_chr4_34371175_34372332
Length = 1158
Score = 1429 bits (739), Expect = 0.0
Identities = 754/759 (99%), Gaps = 1/759 (0%)
Strand = Plus / Plus
Query: 1 atatggatttaaagcatgagtactgggagaaagcaagcaagccagaaaggaagaaagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatggatttaaagcatgagtactgggagaaagcaagcaagccagaaaggaagaaagaca 260
Query: 61 gagagacagagggaaaaaaagaaaggaaggaagacagaaagaaagacagacagacatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagacagagggaaaaaaagaaaggaaggaagacagaaagaaagacagacagacatgca 320
Query: 121 agtctgggtgtgtggtcctcaaaggagagtcacaggaagcaagacataccaaataaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctgggtgtgtggtcctcaaaggagagtcacaggaagcaagacataccaaataaggtg 380
Query: 181 tggtctccccactagttatcttagccataaatacctttttcatggctctcaagttcattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtctccccactagttatcttagccataaatacctttttcatggctctcaagttcattc 440
Query: 241 aaaaggttgctaagaaaccttttccctgttttctttctgctgtgtttagtgagactatgg 300
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 441 aaaaggttgctaagaaaccttttccctgttttctttctgctgtgataagtgagactatgg 500
Query: 301 ggaggctctgaagagaactcttggggctataagctgataagatcaacctagaagttgcta 360
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 ggaggctctgaagagaactcttggggctataagctgataagataaaactagaagttgcta 560
Query: 361 gccttgcacaagggatgtggtgtgtgtcatgtctctacaaaccgggtttctgctgagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccttgcacaagggatgtggtgtgtgtcatgtctctacaaaccgggtttctgctgagaag 620
Query: 421 cctagaaaaatttaggtttgtaggtgggaaaacagaaaggcccctgggaattgttaagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctagaaaaatttaggtttgtaggtgggaaaacagaaaggcccctgggaattgttaagag 680
Query: 481 tgctaagaattcttgtttctctgttgtcaagagccttcgaccaacccctgggtgaaaggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctaagaattcttgtttctctgttgtcaagagccttcgaccaacccctgggtgaaaggt 740
Query: 541 tcctttcttttctcaggtctccctggattgctgtctttctacctcaaatccaccctatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctttcttttctcaggtctccctggattgctgtctttctacctcaaatccaccctatta 800
Query: 601 tattaaaataaaaaatgtaaaacaatatacaatcttcagacaatattagatggcaagttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattaaaataaaaaatgtaaaacaatatacaatcttcagacaatattagatggcaagttt 860
Query: 661 tcatttccagttatggtgaatccagtatgaactctaaataaccacaaaaaaacataaaaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 861 tcatttccagttatggtgaatccagtatgaactctaaataaccacaaaaaa-cataaaaa 919
Query: 721 taaaataaaatagtgaagcccatttaaaggtaatgaaaa 759
|||||||||||||||||||||||||||||||||||||||
Sbjct: 920 taaaataaaatagtgaagcccatttaaaggtaatgaaaa 958
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1158
Length adjustment: 10
Effective length of query: 749
Effective length of database: 1148
Effective search space: 859852
Effective search space used: 859852
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
