Query= MSMg01no130_d17.b1 MSMg01no130_d17.b1 CHROMAT_FILE:
MSMg01no130_d17.b1 PHD_FILE: MSMg01no130_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:56 2005
(709 letters)
>mm_chr4_37968883_37969992
Length = 1110
Score = 1197 bits (619), Expect = 0.0
Identities = 688/711 (96%), Gaps = 3/711 (0%)
Strand = Plus / Plus
Query: 1 tccttctcatacacgcatgtgtgtgtcacttcaaagatttttgtatgaactataaaccag 60
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttcgcatacatgcatgtgtgtatcacttcaaagatttttgtatgaactataaaccag 260
Query: 61 catttacattttaatcattgcaaatgatttatgaatcataagccaaaataagttccaagg 120
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttaaattttaatcgttgcaaatgatttatgaatcataagccaaaataagttccaagg 320
Query: 121 g-ttttggcagggccagccttgtaccatttaggataaacaggtgcaattactacctcaca 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttttggcagggccagccttgtaccatttaggataaacaggtgcaattactacctcaca 380
Query: 180 tgttggtttcattgctataacctttaaaaagtcattttgtaatatttccacactcataca 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tgttggtttcattgctataacctttaaaaagtcattttgtaatatttccacactcacaca 440
Query: 240 ttgcttgaggaaaaattttaatcctttcactagattataaaattctttatacacttttcc 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ttgcttgaggaaaaattttaatcctttcactagattataaaattcaatatacacttttcc 500
Query: 300 cgatgtgatttataatactatacatacccattatgtataattcactacagatggtgaaag 359
||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||
Sbjct: 501 tgatgtgatttataatactatacatacccattatgtataatttattagagatggtggaag 560
Query: 360 attttatgcaggtcataccatttctttcctaaatcttaaatggacacacagattgattgt 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 attttatgcaggtcataccatttctttcctaaatcttgaatggacacacagattgattgt 620
Query: 420 tgagaatacacaagttgccagtaacattaccctgtcatgtagagggcatcactcaccttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagaatacacaagttgccagtaacattaccctgtcatgtagagggcatcactcaccttc 680
Query: 480 catcacaatttatcaccctaattatgctattcataatctcatgtggagattatgggagaa 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 catcacaatttatcaccctaattatgctattcatagtctcatgtggagattatgggagaa 740
Query: 540 gactcaagaatattttcccaatttaatttgctgccaaattttcccattcgctgttatcat 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 gactcaagaatattttcccaatttaatttgctgacaaattttcccattcgctgttatcat 800
Query: 600 tattgttaccattatatcaaaaattattttttaactttgtttaataaattattttattta 659
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttgttaccattatatcaataattattttttaactttgtttaataaattattttattta 860
Query: 660 tattacgttgcaaatgttgctacccttccaggtaccccccc-tcccagggt 709
| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 t-ttacattgcaaatgttgctacccttccaggtacccccccctcccagggt 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1110
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1100
Effective search space: 768900
Effective search space used: 768900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no130_d17.g1 MSMg01no130_d17.g1 CHROMAT_FILE:
MSMg01no130_d17.g1 PHD_FILE: MSMg01no130_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:56 2005
(633 letters)
>mm_chr4_38127167_38128199
Length = 1033
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Minus
Query: 1 ctatactagaagtgcagcctgggagaatcagaaagttcttgccattcacaaatgtgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctatactagaagtgcagcctgggagaatcagaaagttcttgccattcacaaatgtgttac 425
Query: 61 tagattgaagattaattgcatcagatcctgttcaataaaaatgagaagaaaactgaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tagattgaagattaattgcatcagatcctgttcaataaaaatgagaagaaaactgaagaa 365
Query: 121 caagccaaattacgggagacttaaataggattgtttataggaaagtaaaggacattgtta 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 364 caagccaaattacgggagacttaaataggattgtttataggaaagtgaaggacattgtta 305
Query: 181 tgagtaagataattgatttgggatatattgaaaaataaggagaggttaaaaaataaagta 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 tgagtaagataattgatttgggatatgttgaaaaataaggagaggttaaaaaataaagta 245
Query: 241 aatatattttcaaggttgggaaagtttgagagtaacagttaaagcagtggttatcaccct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 aatatattttcaaggttgggaaagtttgagagtaacagttaaagcagtggttatcaacct 185
Query: 301 ccctgctgctatgaaccattaataaagttcttcatattttgctgacctccaactttaaaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 184 ccctgctgctatgaaccattaataaagttcttcatattttgttgacctccaactttaaaa 125
Query: 361 ttatttttgttactccattttgctaccttatatctgtaattttgttacttttatgaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttatttttgttactccattttgctaccttatatctgtaattttgttacttttatgaatca 65
Query: 421 taaagtaaatatatttgttttgagatagtcttagacaacccctgtgaaagtcacatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 taaagtaaatatatttgttttgagatagtcttagacaacccctgtgaaagtcacatttct 5
Query: 481 acct 484
||||
Sbjct: 4 acct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
