BAC Information

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BAC

Clone NameMSMg01-130D22
Chromosome4 (Build37)
Map Location 55,282,150 - 55,282,448
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
Downstream geneRad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130D22.T7 (MSMg01no130_d22.b1)MSMg01-130D22.TJ (MSMg01no130_d22.g1)
ACCAG338048AG338049
length734809
length of high quality
(start - end)
299 (64 - 362)225 (73 - 297)
definitionCHROMAT_FILE: MSMg01no130_d22.b1 PHD_FILE: MSMg01no130_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:57 2005CHROMAT_FILE: MSMg01no130_d22.g1 PHD_FILE: MSMg01no130_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCGAGAAACCGCGGAATTCTGACAAAC
TGTCTCAATTAGAGTTACTCACCCTTTACATCCCATAATTTTTGATACTG
ACTGTGTTCCTTAGCCTCTTCTTTTGTGGCATACTGTAGATCTGACTTGT
CTTCAGAGACAATGGGATGTGAGTTAAAATTTTATTTATTTTTATCTATT
TATTTATTTACATATAAATAAATAACAAATAATAAATGTATTAATATATT
AATAAGTACATTAATTTAATATATTTTATATAATTTATACATTTTATATT
CATATTAACTATTATTATATATTTGTATGTTCCATATTTAAATATGTGCT
TGTGTATATACATATTTTAATATATGTATTATATATACATATTAATATTT
TGCTAACATTTCTTGACACAAAATTCCTAAAATTTTTAAACTTTTGTGTA
TGATATTTTTGGTATACTAATAAATTTGATTCACAGCAGTCCCAGGATAA
TATCAATATGGAGGCTGGCTACTAGAGAGACCACTGCAGGGCTGGAGGGT
CAGAACTTTGAGCCCCCTTCTCAAACCTCATTGAAGGGAATGAGACTGAA
GGATTCATTGGCTATCAAAGACTCGAGATTTCATCAATCTGCCTGCAGAA
TGACACTTCCATAAGAACTCCAATGCGGTTTAAAGATCTTCAGATAGCCA
AACATGCTGCGGTGCGTATGGGCTGGCATTCCTG
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGCCATGTTTAGAAAAGAAAGAGCTG
GGTATGCTGGTACACACTGTAATCCTAACCCTATAGGGAGACAAATGGAT
CCCTGGGGTTTGTCAGACAGCCAAGCATTGCCTATCAGGTGAGTTTCAGG
CCAGTTCCAAACCTTGAGAAACTCTGAAGGAAAAAAAAAATAGAAGGGAA
GGAAGAAGAGGAGGAGGAAGGAGGATGAAGAGGAGGGTGGGGAGGCTTCC
CCTCTTCCCTCTCTTTTTTTTTTCTCCTCCCCCTTTTCCTTTTTTCCCCC
CTTTTTTTTTTTCCCCCCCCCCCCCCTCCCCTCTTTTTTCTTTCCCCTTC
TCTTTTTTTATTGCCCCCCCCTCCTCTCTTAAAACTTTTTTTTTTGCTTT
TTTTTTCTCGCTTTTCCTCCCTTTTTTTACTCCTCCTTCCCCCTCTTATT
TTTCCTTTCCTTTCTCCTTTTCCCTTTCTTTCCCTTCCCCCCCTCTTTTC
CATATTTCTGTTCTTTCTTTCCTTACCCCTTCCCTCCCTCCCCCTACTCT
TCTTTCTTTTCCCGCCCTTTCTCTTACTTTCCCCCCTTCGCCTTCTCCCT
ATATTTTCCTTTTTTTCCTCTCTCCTCTTCCTCTTCTTCCTTTTCTCCGT
TCTTTCCTTTCCCCTTTTATTTTTCCCTCTCCTTTTTTCTTCCTTTTTCC
CTTTCCCCCTTTTTCCTCCTCCTTTTCCTTCCTCTTTTTTTTTTCCTTCC
CCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_d22.b1 MSMg01no130_d22.b1 CHROMAT_FILE:
MSMg01no130_d22.b1 PHD_FILE: MSMg01no130_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:57 2005
         (299 letters)



>mm_chr4_55281950_55282648
          Length = 699

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttactcaccctttacatcccataatttttgatactgactgtgttccttagcctcttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttactcaccctttacatcccataatttttgatactgactgtgttccttagcctcttctt 260

                                                                       
Query: 61  ttgtggcatactgtagatctgacttgtcttcagagacaatgggatgtgagttaaaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtggcatactgtagatctgacttgtcttcagagacaatgggatgtgagttaaaatttt 320

                                                                       
Query: 121 atttatttttatctatttatttatttacatataaataaataacaaataataaatgtatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatttttatctatttatttatttacatataaataaataacaaataataaatgtatta 380

                                                                       
Query: 181 atatattaataagtacattaatttaatatattttatataatttatacattttatattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatattaataagtacattaatttaatatattttatataatttatacattttatattcat 440

                                                                      
Query: 241 attaactattattatatatttgtatgttccatatttaaatatgtgcttgtgtatataca 299
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaactattaaaatatatttgtatgttccatatttaaatatgtgcttgtgtatataca 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)