Query= MSMg01no130_e24.b1 MSMg01no130_e24.b1 CHROMAT_FILE:
MSMg01no130_e24.b1 PHD_FILE: MSMg01no130_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:03 2005
(189 letters)
>mm_chr4_34699931_34700519
Length = 589
Score = 350 bits (181), Expect = e-101
Identities = 187/189 (98%)
Strand = Plus / Minus
Query: 1 cagttcttagctcctggttcagaattgtccccacctatctgattttgggcgtctccctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagttcttagctcctggttcagaattgtccccacctatctgattttgggcgtctccctac 330
Query: 61 cttccctagagtcactctttgagtgaagatggtaatttggggtgttataatgtggaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 329 cttccctagagtcactctttgagtgaagatggtaatttggggtgttataatatggaagtc 270
Query: 121 aaattagatccctgacagagaaataataaactagaaactttagcgcactccacagctgac 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 269 aaattagatccctgacagagaaataataaactagaaactttagtgcactccacagctgac 210
Query: 181 ggagtcaaa 189
|||||||||
Sbjct: 209 ggagtcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_e24.g1 MSMg01no130_e24.g1 CHROMAT_FILE:
MSMg01no130_e24.g1 PHD_FILE: MSMg01no130_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:03 2005
(433 letters)
>mm_chr4_34553873_34554710
Length = 838
Score = 783 bits (405), Expect = 0.0
Identities = 426/435 (97%), Gaps = 5/435 (1%)
Strand = Plus / Plus
Query: 4 cacagcaaaaattggatgctagcacatatttcgaaatggcttcatttcagacttgcgtaa 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 204 cacagcaaaaattggatgctagcacaaatttcgaaatggcttcatttcagacttgtgtaa 263
Query: 64 cctcttaactgaatttaagagttcaccacagtgattttttttt---cttagaaatgatca 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 cctcttaactgaatttaagagttcaccacagtgattttttttttttcttagaaatgatca 323
Query: 121 tgttgcagcgacgaaggccatacataactttagaacatgacacctgttttacttgtggta 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 tgttgcagcgacgaaggccatacataactttagaacatgacacatgttttacttgtggta 383
Query: 181 tataggctgtgtttgattgtactttctcattttctatatatactcttatacatcattaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataggctgtgtttgattgtactttctcattttctatatatactcttatacatcattaga 443
Query: 241 tatgagaagtaaatacaagactcatactattttattacagaaatgtaaaaaggaaattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatgagaagtaaatacaagactcatactattttattacagaaatgtaaaaaggaaattat 503
Query: 301 tcacctctgtttcagatttcatccgttgccatagcaagctatatgtttcaaatcgaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcacctctgtttcagatttcatccgttgccatagcaagctatatgtttcaaatcgaagtt 563
Query: 361 tactgtcctcagagtcaagttcctcattattaaaataatcctctaaaaaaaaaac--ccc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 tactgtcctcagagtcaagttcctcattattaaaataatcctctaaaaaaaaaaaaaccc 623
Query: 419 agaaagtcaagtttt 433
|||||||||||||||
Sbjct: 624 agaaagtcaagtttt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 838
Length adjustment: 9
Effective length of query: 424
Effective length of database: 829
Effective search space: 351496
Effective search space used: 351496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
