BAC Information

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BAC

Clone NameMSMg01-130L18
Chromosome4 (Build37)
Map Location 77,087,842 - 77,088,129
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130L18.T7 (MSMg01no130_l18.b1)MSMg01-130L18.TJ (MSMg01no130_l18.g1)
ACCAG338412AG338413
length731736
length of high quality
(start - end)
329 (371 - 699)293 (64 - 356)
definitionCHROMAT_FILE: MSMg01no130_l18.b1 PHD_FILE: MSMg01no130_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:40 2005CHROMAT_FILE: MSMg01no130_l18.g1 PHD_FILE: MSMg01no130_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTTTGTTT
ATCTCTGAACACCATTTTTAATAGGGTTATTTGATTCTCTGGAGTCTAAC
TTCTTGAGTTTTCCCGTATATATTGGATATTAGTCAGATATAGAATTAGC
AAAGATCTTTTCTCTATCTGTTGGTTGATGTTTTGTCCTATTGACAGTGT
CCTTTGCCTTACAGAAGCTTCACAATTTTATGAGGTCCCATTTGTAAATT
CTTGGTCTTACAGCACAAGCCATTGTTGTTCTTTTCAGGAATTTTTCCCT
TGTGCACATATCTTTGAGGATTTTCACCATTTCCTCCTCTATAAGTTTCA
TTGTATCTAGCTTCACGTGCAGGTCCTTGATCCACTTGGACTTGAGCTTT
GTACAAGGAGATAAAAATGGATTGATTTGCATTCTTCTAAATGCTGACTG
CCAGTTGAACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGG
ATGGTTTTAGATACTTTGTCAAAGATCAAGTGACCTTAGGTGTATGGGTT
CATTCCTGGGTCTTCAATTCCATTCCATTGAACTACCTGCCTATCTGTGT
AAAAATACCATATAGTGATACAACTTGAGGTCAGGGATAGTAATTCCCCA
TAAGTTCTTTAATTGTTGAGAATATGTTTCACGGCTTTTTTTTGTTGTTG
TTGCTGTTGTTGCTATTCCAGATGTATCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAGGTGAAATATTTTGTCCATGGATACAGTAGATGA
GCTCCTCCTTGCTTCCGTTCCTTAACAACAGGTGGGAATATATTTCAATA
GGACTGAAAGTATTGACATAAGTTTACTGATGAGAATTTCTCAACTTATG
TTAATTTGGACTTCTATGTGTTTGCGATAGTTGTCTTGCCTGGAAGACAA
TAATGCAAAACTAGTCATGACCCTTTCCAAAAGGAAGAGATATACCAGAA
ATTATTTGGTGTACATCATACAGTAGGGAATCTAATCTCTAAATGTGGGT
GGTATTCTTTTCTCACCCGCCCCCTGTACTTATCATGAAGTGACCAGAAC
ATAACAGCACGAAGAAGGCCAAATCACAAGGAAATAATTTCAATGTTGTT
TTCTTACAGATCAGCCTGAAGGGGAAAATAGTGTGTTTGAAAAGAGATTT
GTGGGGCCTTTTGGGAAGGGGTAGATCATGGAGCAAAGCAACAAATATGT
ACAGTAGTAGGCAGAAGGATTATTATGCTGAAATACTTGTGTTAGAAGAA
ATATTTGAAGATATACAATTAATGCTTAACTGTAGAACCCATACACGTGA
TCTGCTGAGGTCTTAAGTAGAAATTATTCTTTCTTGATGAGCTAAGCAAT
TTTCACTGTACTGGCTGGTTTTGTGTGTCAACTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_l18.g1 MSMg01no130_l18.g1 CHROMAT_FILE:
MSMg01no130_l18.g1 PHD_FILE: MSMg01no130_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:40 2005
         (293 letters)



>mm_chr4_77087642_77088333
          Length = 692

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggtgaaatattttgtccatggatacagtagatgagctcctccttgcttccgttcctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 caaggtgaaatattttgtccatggatacagtagatgagctcctccttgcttt-gttcctt 259

                                                                       
Query: 61  aacaacaggtgggaatatatttcaataggactgaaagtattgacataagtttactgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacaacaggtgggaatatatttcaataggactgaaagtattgacataagtttactgatga 319

                                                                       
Query: 121 gaatttctcaacttatgttaatttggacttctatgtgtttgcgatagttgtcttgcctgg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 gaatttctcaacttatgttaatttggacttctatgtgtttgcaatagttgtcttgcctgg 379

                                                                       
Query: 181 aagacaataatgcaaaactagtcatgaccctttccaaaaggaagagatataccagaaatt 240
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 aagacaataatgcaaaaccagtcatgaccctttctaaaaggaagagatataccagaaatt 439

                                                            
Query: 241 atttggtgtacatcatacagtagggaatctaatctctaaatgtgggtgg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttggtgtacatcatacagtagggaatctaatctctaaatgtgggtgg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)