BAC Information

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BAC

Clone NameMSMg01-130M16
Chromosome4 (Build37)
Map Location 120,258,735 - 120,258,917
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps
Downstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M16.T7 (MSMg01no130_m16.b1)MSMg01-130M16.TJ (MSMg01no130_m16.g1)
ACCAG338456AG338457
length7141,228
length of high quality
(start - end)
190 (127 - 316)264 (141 - 404)
definitionCHROMAT_FILE: MSMg01no130_m16.b1 PHD_FILE: MSMg01no130_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:46 2005CHROMAT_FILE: MSMg01no130_m16.g1 PHD_FILE: MSMg01no130_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTCTCCGGTTTCCTTACTTGCTGGAAACCGCTCTAGCCTAGTGCAGT
CACTTCTAGCTTGGTGTTTCCCCCTTGGCTCCTAGCCACCTGCTTCACCC
TGCCTCCCAGCTGTGCCCTGCCAGCCTGTAGTGTCCTGTCTCCCACCCCC
ACCCCCACCTTCCCAGAGCTTTGATCCGACTCCCCCTCCCCTTTGGAGAG
TGAAACTCTTTGGCCACTCTGGGCAGGTTAGAGCCCCCAAAATCCCCACG
GATATCACAGACCAGTACACTTTTTATTCCTAGCACTTGTGAGGCATAGG
CACGCACATTTTTTGTTCCCCCCCCCCCCCCGTTTTACACAGCTCGCTCC
AGATAGCTGGGACCACCCCCAACTAAATAATCACAAGATCGTTGCGCGTG
TACACAAACAAGCTACTTCCTCATCCCCCCCCCCCAAAACCTGTTCTTTG
CACAGCTTACCCCTTTTACAATGACGCCCTGCATGGCGTCTCTGTCCGCT
CCCTTCACACTGTGCTGATGCTGATGACAGACAGACCCCTGCTTCCCCTT
TTTTTAAACCTTCACTTTTCTACTCGTGCTTCCATTTATTCCAACCATTG
TTCCATTTTCTTCAGTGTTTTCGCCTGCCCCTCTCACTCCCTCCCAGTTC
CCTTTTATATTTCT
CACTCCATTTNTNNACACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCGCCCTTGNCAGTAG
CTGTATGTATTTCCATCCCTTTAAATGTTTAACAGGCTCCAATTCTGTGT
CTCCTCTATCTTGCCTCAAGCCAATAGTTGTTCACCAAGAATATAAGTTA
TGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTAACTGCTCTTTCAG
AGATCCTGAGTTCAATTCCCAGCAAGCGCTTGGTGGGAGGACTGTAATGG
AATTCCATCTGTAATGGAATCCGCTGCCCTCTTCTGGTGTGTCTGAAGAC
AGCACATGCATAAATAAATCTTTTTTAAAAGAAGAGGAGGAGGAGAAGGA
AGGATTTTTAAAAGAAGGAAGAAGAAGAAAAGAAAGAAGAAAAGAGGAGA
AGAATAATGGTTTATGCCCTAGGGATACAGCACTGTCAGTAGAGTGCTTG
CCTAGCATGCAAAAAGCCCTTAGTTTGATCCCTGTCACTGTATAAACTGT
ATGCTTGTAATCCCAGCACTTGGGAGGTAGAGGCAGGAGAATCAGAACTT
CAAGGTCAGTCTTGTTTAGGTAGTAAGTTCAGAGCCAGCCAGCGATGGAT
GGATGGATATATGAATATATGAGTGTGTGTGTGTGTGTGTGTCTCTCTCT
CTCTCCCTCCTCTTTCTTCTTTTCTTTTTCTTCTTCTCCTTTCTTTTCTT
TTTTTTTTTTCCCTTTCTTTCTTTCTTTTTTTTTTTTTCTCTNTTTTTTT
CTTCTTCTCTTTTCTCTCTTTCTTCTTCTTTCCTCTTCCCCCTTTTACCT
CCCTCTTCTTTTTTTTTTTTTTTCTTTTTTCTCTTCCCTCTTTTTCTCTC
TTTTCTTTCTTTTTTCTTCTCCTCCTTTATCTCTTTCTTTTATTTTTATT
ATCTACTTTTATTTCTTTTTTTTTACTCAACTCTTCTCTATTCTTCTTTA
TATTATTTTTTCCTATTTTTTATTCTAATTTTTCTCTCTATTTACTTACT
TCTTTCCCTTCTTTTCTATCTTATCCCTTCTTTCCTTTATTCTCCTCTTA
CCTTTCTTTATTTATCTATCTCTCACTCCTATCTATCAATTTCTTTTCTT
TTCTTCATATTTTCTCCTTCTCTTTTTCTTTTACTTATCCCTTATTTCTT
CTTTCTCCTCTAATTCATTCTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m16.b1 MSMg01no130_m16.b1 CHROMAT_FILE:
MSMg01no130_m16.b1 PHD_FILE: MSMg01no130_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:46 2005
         (190 letters)



>mm_chr4_120258529_120259118
          Length = 590

 Score =  339 bits (175), Expect = 9e-98
 Identities = 183/189 (96%), Gaps = 6/189 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctcctagccacctgcttcaccctgcctcccagctgtgccctgccagcctgtagtgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggctcctagccacctgcttcaccctgcctcccagctgtgccctgccagcctgtagtgtcc 266

                                                                       
Query: 61  tgtctcccacccccacccccaccttcccagagctttgatccgactccccctcccctttgg 120
           |||||||||||||||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtctcccacccccacc------ttcccagagctttgatccgactccccctcccctttgg 320

                                                                       
Query: 121 agagtgaaactctttggccactctgggcaggttagagcccccaaaatccccacggatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtgaaactctttggccactctgggcaggttagagcccccaaaatccccacggatatc 380

                    
Query: 181 acagaccag 189
           |||||||||
Sbjct: 381 acagaccag 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)