BAC Information

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BAC

Clone NameMSMg01-130O14
Chromosome4 (Build37)
Map Location 10,574,780 - 10,779,259
singlet/doubletdoublet
Overlap gene1700123O12Rik, LOC383991, LOC100039656
Upstream geneAsph, Gdf6, 4930448K20Rik, LOC666840
Downstream geneLOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130O14.T7 (MSMg01no130_o14.b1)MSMg01-130O14.TJ (MSMg01no130_o14.g1)
ACCAG338547AG338548
length7311,203
length of high quality
(start - end)
114 (128 - 241)303 (471 - 773)
definitionCHROMAT_FILE: MSMg01no130_o14.b1 PHD_FILE: MSMg01no130_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:56 2005CHROMAT_FILE: MSMg01no130_o14.g1 PHD_FILE: MSMg01no130_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,574,780 - 10,574,891)(10,778,994 - 10,779,259)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAAAGGTATCCGTTTAATATTTTCAATAAAGAACTATATGTTGTT
TCCCTAGCCATAGGTAATGGACCCAACAATAGAAAGAGACGGGAAGAGAA
GGAAGAAAGAAAAGAGAGAACAGGGGTCTGAGGGGGGTAAAGGGAAAGCA
GTGGTGGAAGGGAGAGAAGTGTGGGTAGGGAGAAGACAGCTATCTCTGAT
GTCCTCCTGTTGTCCATTCCATCCCTCCATACCCAATCTTCTTGTCCAAC
TCCTTCCTTCTTCGCCTTCTTTTTTTTTTCCTTGCCCTGCTTTCTCATGC
AACGCGTTCTAAATAACTCCAGGGCAGGACTCCAGTTTTATCCTCTTGAT
ATTATTTTACTTCCCCCCCTACAAAAAAAAAAAATCCCGGGCGGGGCGGG
TGATCACCTCCTTCTTCTTTCCTCTTTCCTTCTCCTCTTCCACCTTTCTA
CTTCTCTCTTTCTCCAACGTTCTCGTACGTCCCTTCATCCACTTCTCCTA
CCTTCTTTCCATACCTGAGATTTATTTCCGTTTCTTCATTTTTTTTCCCT
TCTCCCCCTTTTTTTTTTCCTTCCCTTTTCTTCCCATCCTTCCCTTTTCT
TTCTTCCCTTTCTTCCCTTTCCCTTCCTTTTTTTCCCTTTCTCCCCCCCC
TTCCCCTCCCCTTTCCCTTTTTTTTTTTTTT
CAGGCCCTTTTNNTTCCCATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATATTAAGGTTCCACTGTAGCT
GATTGCATAACTGCTACCCTTTGAAGTCTCTTTTGGGCTCACTGTATTTA
ATCACTAGAGCTGGAGAAATGTGGGCAGAGAGGTAGGTTATTTGCTTGAG
CTTGGGTATTACAATGGAGCTTACTACAAACTTTACATTCATTTTACCAC
TTTGCACAGTATCGTCACAATTATCTTGATATTGGCTCTCTTACACAAAT
AAACAAAACCCAGTTGATACCAGAATTCTTAATGGTTACATCAGTTCTTC
CAATGCATCCATCATCTATATGGGGAGACAGTTTGCTGGTAGGTACTCAG
CTATCTTTTCAGAATCATCTTTTCATATATTCTTAATTCTTCTAGAAATA
AAATAATTGAAAACACCTCTGTGCTAATCTGAGCCTTTTATGTGCATGCC
GACTACCTATGTGGCCAGGCTACTTGTGATTGGTTTTGTAGCAGTGACAT
CAGTGCTGATGATCACTGCTATTTCCCAAGGTCATGCATATGTGTCTGTG
TGCACGCATACTCTAATGCTTTAAAAAAAATACTTCATCAGAAATACACC
TGGTTACTAACAAATTTTCCTAGTAGCCTCTGTGAATGTGGTTTTTCATG
TAAGTTAAAACATATAAGAGTAAAACATGAAGATTATTAAAATGGGTATA
AATAACTATCTTTAGAGAAAATAAAAGAAAGAGGAAAATGACATGATAAA
TGTGATATTTTGTAAGCAAAACCTCAAAATTATGAAGTTAGGACTTCTAG
GGTTCATCTCTCCTAGCCTTTTAAAATAGGCACTTTAATATTTTAAACTA
AAACTGTATTACTGTGTGCATACGTTATGGAATCATGTGTGCACACTTAT
GTGCGTGGGTGTCTTTACCTGTGCATGAACCCCCGGAGGCAGGAAGCTTA
GAAAGGCATTTTTATTCCTTGGCCCCCTCATTTTTTTCAAAAAAGGTTTT
TCCAGAAGCCTTGAAATTTGCTTCCACCGGTTTTTCCCCGGGGGCGTCCC
CGACCTGGTTTTCTGTTTCTTCCCCCCCCGTAGGGGGGGGGTGGAAAAAT
CAAAAATTATGGCCCTCTCCGGGTTTAGAAAACACCCTTAATTTCTTCCC
GCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_o14.b1 MSMg01no130_o14.b1 CHROMAT_FILE:
MSMg01no130_o14.b1 PHD_FILE: MSMg01no130_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:56 2005
         (114 letters)



>mm_chr4_10574580_10575093
          Length = 514

 Score =  201 bits (104), Expect = 1e-56
 Identities = 110/112 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagaaagagacgggaagagaaggaagaaagaaaagagagaacaggggtctgagggggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagaaagagaccggaagagaaggaagaaagaaaagagagaacaggggtctgagggggg 260

                                                               
Query: 61  taaagggaaagcagtggtggaagggagagaagtgtgggtagggagaagacag 112
           |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 taaagggaaagcagtggtggaagggagagaagtgtgggcagggagaagacag 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no130_o14.g1 MSMg01no130_o14.g1 CHROMAT_FILE:
MSMg01no130_o14.g1 PHD_FILE: MSMg01no130_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:56 2005
         (303 letters)



>mm_chr4_10778757_10779459
          Length = 703

 Score =  476 bits (246), Expect = e-139
 Identities = 261/266 (98%)
 Strand = Plus / Minus

                                                                       
Query: 38  tatgtggccaggctacttgtgattggttttgtagcagtgacatcagtgctgatgatcact 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 503 tatgtggccaggctacttgtgattggttttgtagcagtgacatcagtgctgatcatccct 444

                                                                       
Query: 98  gctatttcccaaggtcatgcatatgtgtctgtgtgcacgcatactctaatgctttaaaaa 157
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctatttcccaaggtcatatatatgtgtctgtgtgcacgcatactctaatgctttaaaaa 384

                                                                       
Query: 158 aaatacttcatcagaaatacacctggttactaacaaattttcctagtagcctctgtgaat 217
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 aaatacttcatcagaaatacacctggttactgacaaattttcctagtagcctctgtgaat 324

                                                                       
Query: 218 gtggtttttcatgtaagttaaaacatataagagtaaaacatgaagattattaaaatgggt 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtggtttttcatgtaagttaaaacatataagagtaaaacatgaagattattaaaatgggt 264

                                     
Query: 278 ataaataactatctttagagaaaata 303
           ||||||||||||||||||||||||||
Sbjct: 263 ataaataactatctttagagaaaata 238


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)