Query= MSMg01no131_j16.b1 MSMg01no131_j16.b1 CHROMAT_FILE:
MSMg01no131_j16.b1 PHD_FILE: MSMg01no131_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:53 2005
(247 letters)
>mm_chr4_13410357_13411003
Length = 647
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Plus
Query: 1 ctacatgtgaaaggttctgacccttcctactctacctaatcccttttgtagattccagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacatgtgaaaggttctgacccttcctactctacctaatcccttttgtagattccagta 260
Query: 61 aggacaatttattgaatttctggtcccacagaagacattgacacattgcaggacttgtgc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aggacaatttattgaatttctggtcccacagaagacattgtcacattgcaggacttgtgc 320
Query: 121 tacgagactgcaagtgatatttaccagtctaagaagtccaatagtccattttgctttgtg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcgagactgcaagtgatatttaccagtctaagaagtccaatagtccattttgctttgtg 380
Query: 181 gtcttaaccccggagtttttaaatggctattcatcattacagaggatattatcatacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttaaccccggagtttttaaatggctattcatcattacagaggatattatcatacatg 440
Query: 241 ccct 244
||||
Sbjct: 441 ccct 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no131_j16.g1 MSMg01no131_j16.g1 CHROMAT_FILE:
MSMg01no131_j16.g1 PHD_FILE: MSMg01no131_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:53 2005
(550 letters)
>mm_chr4_13557563_13558512
Length = 950
Score = 928 bits (480), Expect = 0.0
Identities = 530/550 (96%), Gaps = 6/550 (1%)
Strand = Plus / Minus
Query: 1 atttgtagagggtgctgtgttttaatctggacaaggatgttttgaccatttataattata 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 592 atttgtagagggtgctgtgttttaatctggacaaggatgttttgatcatttataattata 533
Query: 61 ttttgtcatgttgaagaattatacttttgaggtactatattagacttacgtacaacatga 120
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 532 ttttgtcatgttgaagaagtatacttttgaggtactatattagacttacatacaatatga 473
Query: 121 atgagctgcttgcatgaatgatgttgatatttctgtatgctaattaaaaagtgttacaca 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atgaactgcttgcatgaatgatgttgatatttctgtatgctaattaaaaagtgttacaca 413
Query: 181 tggtcttgctgaagcttgagcctttaaagggtaaacttattcagttttaaaccagggagt 240
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 tggtcttgctgaagcttgaggttttaaagggtaaacttactcagttttaaaccagggagt 353
Query: 241 tgaatgaaagctagaatcaactgattttcttatatatgacagatgtcagagaatgaccaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgaatgaaagcaagaatcaactgattttcttatatatgacagatgtcagagaatgaccaa 293
Query: 301 tgagaagagggatgactctgaagaatacagggacatgattatatataaatcaaggttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgagaagagggatgactctgaagaatacagggacatgattatatataaatcaaggttatt 233
Query: 361 tttgtgtcaacagcttctagatgggtttttttttttttggcaatttcttgaaggaagaat 420
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 232 tttgtgtcaacaacttctagatgggttttttt------ggcaagttcttgaaggaagaat 179
Query: 421 atccctgtcgaagcccaagaaacaaccccaaatctatcttaagcctatttttaatggttt 480
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 178 atccctgttgaagcccaagaaacaagcccaaatctatcttaagcctatttttaatggttt 119
Query: 481 actttgaatgaaaatcattaacaacagaaaatttttaccaataacttggagtggagaata 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 118 actttgaatgaaaatcattaacaacagaaaatttttaccaataacttagagtggagaata 59
Query: 541 gttaggagca 550
||||||||||
Sbjct: 58 gttaggagca 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
