BAC Information

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BAC

Clone NameMSMg01-131M06
Chromosome4 (Build37)
Map Location 103,689,370 - 103,779,771
singlet/doubletdoublet
Overlap genenone
Upstream geneInsl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
Downstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131M06.T7 (MSMg01no131_m06.b1)MSMg01-131M06.TJ (MSMg01no131_m06.g1)
ACCAG339182AG339183
length721751
length of high quality
(start - end)
640 (71 - 710)266 (132 - 397)
definitionCHROMAT_FILE: MSMg01no131_m06.b1 PHD_FILE: MSMg01no131_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:06 2005CHROMAT_FILE: MSMg01no131_m06.g1 PHD_FILE: MSMg01no131_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,779,134 - 103,779,771)(103,689,370 - 103,689,635)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCATATGCCACGAGTTGTTCTAAATGTCTACCATGCCGAGACTG
TGAGCATTAACTTCCCTTTTGCCCAGTATAAAAACTTGACACACGGTGTG
GTTAAAAGTCTTGGTAAAGGCTGCAAGCAACTCAGAAGTGACAAAGGTAG
GATTTGAACCCAGCCTCTCCTCTGCCCAGTCCAGCCTTTTTGTCACTACT
CAAAATCTCTTCTGATGCCATTAGATTTCTGTTTGGGAATGATAGCAATG
GGATGGGAAATAGTAGGGGTTGTAGAACTGCATGCTCAATGAAAGAATGA
GCATTGAGTTTTATATTTGAAGGGCTCCCTAACAGGCTTTAAGAATGACA
GGATCAACTGAGTGTGAAATTTTGAGAACACTCTTATGGAGGTGGCAGGC
TTGGATGATGACAAGTAACAATACAGGGACAGGGAAACCAGCAAATTAGG
GATCCTGGAAAGAGCCCCAGCTAGAGAAGATGACTCAAAGTTCAACTTCA
GAAGCCTGCAGAGGAGGTCCCTAGGCGCTCATTATTCCTAAATGGATCCC
CAATTAAGTGTCAGGCAAAAATTCAAGCCAGCACATGGACACTGCTATTT
TCAAGAAACATCAGGTCTAACTACTCTGCAGACAAAATTCCTAACCGTAA
TTGATGCCTTAAACCTCAGCA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAAAAGGAGGTGA
ACTATAGAAGGATCCCTGAAATTCTCAGGGGACATGGCATCTCGCAGGCA
TGTGGATGTGAAAGGCTTGTTGCCTGAGAGTAGTAAGGTCCCTGGCACCA
TGGAAGCATTCAGCAAACATGGGGTTGAAATAAATCAAATAACACATCTG
GATGAGCATCACTAACTGCACACAGAGCAGGATGCAAGGGAGAGCCTGGC
AGCCTTTGCTTTCGGAGGAATGAGTGATACAGATTTCTCTAAAAGCAAGA
GCAAATTTTATGAGGGCCCCTCACAGATTTCTCATAATAATGAATTCACT
ATTAAACATTCTCCCCATTCACGCGCACTGATGGATGAACCTCTGAAACA
GGAAGTCCTCAGAGAGATCTATGGGAGTGGAAACATATCTGGGAAGATGA
TGCCGTTCATCACTGGTTATTACAGGAGTCATAGATAGATAGGACCGCTT
GCTGGACTCTGTTTGAAAGCCCCGGTGACAAATGTAAATGCCAGCTATGT
GTTGTCCAGTGCTCCATTCATTTTCACCCCAGAACCAGTCACTGGTGACT
GAACAGGCTTTAACTTAGTGGAAGTGGGGTGGACAGGACAGAGCATCCCA
TTGGGAACTTGAGCACACCAATGAAATCATTGTACCACACAAAACTTTAG
GGCAAGACCAAACTAATAAACGAAGGGGTATCTTGGAAAGAAACAACCCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_m06.b1 MSMg01no131_m06.b1 CHROMAT_FILE:
MSMg01no131_m06.b1 PHD_FILE: MSMg01no131_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:06 2005
         (640 letters)



>mm_chr4_103778756_103779795
          Length = 1040

 Score = 1149 bits (594), Expect = 0.0
 Identities = 627/638 (98%)
 Strand = Plus / Minus

                                                                        
Query: 3    gttctaaatgtctaccatgccgagactgtgagcattaacttcccttttgcccagtataaa 62
            ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 1016 gttctaaatgtctaccatgccgagactgtgagcattaacttccctttttatcagtataaa 957

                                                                        
Query: 63   aacttgacacacggtgtggttaaaagtcttggtaaaggctgcaagcaactcagaagtgac 122
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  aacttgacacacagagtggttaaaagtcttggtaaaggctgcaagcaactcagaagtgac 897

                                                                        
Query: 123  aaaggtaggatttgaacccagcctctcctctgcccagtccagcctttttgtcactactca 182
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 896  aaaggtaggacttgaacccagcctctcctctgcccagttcagcctttttgtcactactca 837

                                                                        
Query: 183  aaatctcttctgatgccattagatttctgtttgggaatgatagcaatgggatgggaaata 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  aaatctcttctgatgccattagatttctgtttgggaatgatagcaatgggatgggaaata 777

                                                                        
Query: 243  gtaggggttgtagaactgcatgctcaatgaaagaatgagcattgagttttatatttgaag 302
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 776  gtaggggttgtagaactgcatgctcaatgaaagaatgagtattgagttttatatttgaag 717

                                                                        
Query: 303  ggctccctaacaggctttaagaatgacaggatcaactgagtgtgaaattttgagaacact 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  ggctccctaacaggctttaagaatgacaggatcaactgagtgtgaaattttgagaacact 657

                                                                        
Query: 363  cttatggaggtggcaggcttggatgatgacaagtaacaatacagggacagggaaaccagc 422
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 656  cttatggaggtggcaggcttggatgatgacaagtaacaatacggggacagggaaaccagc 597

                                                                        
Query: 423  aaattagggatcctggaaagagccccagctagagaagatgactcaaagttcaacttcaga 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  aaattagggatcctggaaagagccccagctagagaagatgactcaaagttcaacttcaga 537

                                                                        
Query: 483  agcctgcagaggaggtccctaggcgctcattattcctaaatggatccccaattaagtgtc 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  agcctgcagaggaggtccctaggcgctcattattcctaaatggatccccaattaagtgtc 477

                                                                        
Query: 543  aggcaaaaattcaagccagcacatggacactgctattttcaagaaacatcaggtctaact 602
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 476  aggcaaaaattcaagccagcacatggacgctgctattttcaagaaacatcaggtctaact 417

                                                  
Query: 603  actctgcagacaaaattcctaaccgtaattgatgcctt 640
            |||| |||||||||||||||||||||||||||||||||
Sbjct: 416  actccgcagacaaaattcctaaccgtaattgatgcctt 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no131_m06.g1 MSMg01no131_m06.g1 CHROMAT_FILE:
MSMg01no131_m06.g1 PHD_FILE: MSMg01no131_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:06 2005
         (266 letters)



>mm_chr4_103689170_103689835
          Length = 666

 Score =  499 bits (258), Expect = e-146
 Identities = 264/266 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaggtccctggcaccatggaagcattcagcaaacatggggttgaaataaatcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaggtccctggcaccatggaagcattcagcaaacatggggttgaaataaatcaaata 260

                                                                       
Query: 61  acacatctggatgagcatcactaactgcacacagagcaggatgcaagggagagcctggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatctggatgagcatcactaactgcacacagagcaggatgcaagggagagcctggca 320

                                                                       
Query: 121 gcctttgctttcggaggaatgagtgatacagatttctctaaaagcaagagcaaattttat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctttgctttcggagggatgagtgatacagatttctctaaaagcaagagcaaattttat 380

                                                                       
Query: 181 gagggcccctcacagatttctcataataatgaattcactattaaacattctccccattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggcccctcacagatttctcataataatgaattcactattaaacattctccccattca 440

                                     
Query: 241 cgcgcactgatggatgaacctctgaa 266
           | ||||||||||||||||||||||||
Sbjct: 441 cacgcactgatggatgaacctctgaa 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)