Query= MSMg01no131_o17.b1 MSMg01no131_o17.b1 CHROMAT_FILE:
MSMg01no131_o17.b1 PHD_FILE: MSMg01no131_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:17 2005
(630 letters)
>mm_chr4_15513810_15514839
Length = 1030
Score = 1133 bits (586), Expect = 0.0
Identities = 618/630 (98%), Gaps = 4/630 (0%)
Strand = Plus / Plus
Query: 3 ctatgtactttgtgtattatataaacaacctcatgtactagttaacattgacgtctgttt 62
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 ctatgtactttgtatattatataaacaacctcatgtactagttaacattgaagtctgttt 262
Query: 63 atttgacacagcctagaatcacctgaaaatagagtcagtattgattagttgtctttcctg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atttgacacagcctagaatcacctgaaaatagagtcagtattgattagttgtctttcctg 322
Query: 123 ttttggtttttgggtgtgtctatatg--agacagtctttgttgttaattgatggaagaag 180
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct: 323 ttttggtttttgggtgtgtc--tatgaaagacagtctttgttgttaattgatggaggaag 380
Query: 181 gcctagcccactacaggaggcaccattccctgtacagggggtcttataagagagcttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagcccactacaggaggcaccattccctgtacagggggtcttataagagagcttgct 440
Query: 241 gagaggaagtttacaagtaacttaacagcaagcaatgttctcccctactttctgtcttca 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gagaggaagtttacaagtaacttaacagcaagcaatgttctcccatactttctgtcttca 500
Query: 301 agttcctgattgaactcctgcctgacttcattcaatgatgtattgccatctgtaaagtga 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttcctgattgaactcctgccttacttcattcaatgatgtattgccatctgtaaagtga 560
Query: 361 aatgatttctttcctcatccaaatattatttccttctccaactatattatcacagcaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgatttctttcctcatccaaatattatttccttctccaactatattatcacagcaaca 620
Query: 421 gaaagaaaactggatcatctcatatacaattattcctatatctagagtatgattaatatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaagaaaactggatcatctcatatacaattattcctatatctagagtatgattaatatc 680
Query: 481 atagtggttaagaatgtcttgatattctccacatgcaggactcctggattactaagtatg 540
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ataatggttaagaatgtcttgatattctccacatgcaggattcctggattactaagtatg 740
Query: 541 ctgtggcttcacaaggcaagaataatttttcaaatttatttttcttaaatcatgtgtggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtggcttcacaaggcaagaataatttttcaaatttatttttcttaaatcatgtgtggt 800
Query: 601 gacacatgactttcatcctagcattttgga 630
| ||||||||||||||||||||||||||||
Sbjct: 801 ggcacatgactttcatcctagcattttgga 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_o17.g1 MSMg01no131_o17.g1 CHROMAT_FILE:
MSMg01no131_o17.g1 PHD_FILE: MSMg01no131_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:17 2005
(228 letters)
>mm_chr4_15669832_15670459
Length = 628
Score = 427 bits (221), Expect = e-124
Identities = 224/225 (99%)
Strand = Plus / Minus
Query: 1 gaaatcatgtgtttagcctgtaagtgctcagtgggtgggctctttccaggaaaccgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaaatcatgtgtttagcctgtaagtgctcagtgggtgggctctttccaggaaaccgagga 366
Query: 61 tgcaggattctgtaaggctgtctgaatttctgcttgaaattattcattctcctgtctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcaggattctgtaaggctgtctgaatttctgcttgaaattattcattctcctgtctggt 306
Query: 121 cagactaaagccattcaccttgctcttagttaagcatcacctttcttgcgatgcatttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagactaaagccattcaccttgctcttagttaagcatcacctttcttgcgatgcatttta 246
Query: 181 caggaacatgttatgccatgttcttgtgctctgatgtcagcagat 225
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 245 caggaacatggtatgccatgttcttgtgctctgatgtcagcagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
