Query= MSMg01no132_c19.b1 MSMg01no132_c19.b1 CHROMAT_FILE:
MSMg01no132_c19.b1 PHD_FILE: MSMg01no132_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:37 2005
(685 letters)
>mm_chr4_36204898_36205981
Length = 1084
Score = 1183 bits (612), Expect = 0.0
Identities = 666/690 (96%), Gaps = 17/690 (2%)
Strand = Plus / Minus
Query: 7 gaattcatcctttc--tttctttagagatagagaggctttttaaaaaattt--ttta-tt 61
|||||||||||||| || |||||||||||||||||||||| |||||| |||| ||
Sbjct: 960 gaattcatcctttcagtt--tttagagatagagaggcttttt---aaattttatttattt 906
Query: 62 ta--ttttta----ttttttcagagaggcttttatactgagaggttagctagctctctgg 115
|| |||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tatttttttatttttttttttagagaggcttttatactgagaggttagctagctctctgg 846
Query: 116 atatcttattgctctgagcttttcaggctttctgtagtccagggtcggttagtgtgcgta 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 845 atatcttattgctctgagcttttcaggctttctgtagtccagggtcggttagtgtgtgta 786
Query: 176 atctactgcagactggatgtttttataagacgactaaaaagtatttgcaggagatgtgag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 atctactgcagactggatgtttttataagacgactaaaaagtatttgcaggagatgtgag 726
Query: 236 atgatttgaaaacaggaagtacagcatctacttttaattatcattgtagctattcaacga 295
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 725 atgatttgaaaacaggaagtacaacatctacttttaattatcattgtagctattcaacga 666
Query: 296 atacataattaaatgcattacatttaataaatactttaactctctcaaaattaacattcc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 665 atacataattaaatgcattacatttaataaatactttaactctctcaaaattaacgttcc 606
Query: 356 tcacagtgtagacaggaacctgcaaacagagaacaccctgtgtatcatagagtaaagcag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcacagtgtagacaggaacctgcaaacagagaacaccctgtgtatcatagagtaaagcag 546
Query: 416 tcagccctgagaggaacaccagtcaagtctgactctgagctatacctttgagcttccagc 475
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcagccctgagaggaacactggtcaagtctgactctgagctatacctttgagcttccagc 486
Query: 476 tcatgtctgctcctgttacactagacaaacctcagcacacagcaagaactctggtttttg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcatgtctgctcctgttacactagacaaacctcagcacacagcaagaactctggtttttg 426
Query: 536 atctatggatgaagaaataagattgaattccaagcttttgaaatgaagctggtgtaaaga 595
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atctgtggatgaagaaataagattgaattccaagcttttgaaatgaagctggtgtaaaga 366
Query: 596 aagtgacaggaacatgagtcctggaaagagaagcttcaaccttttgacaggaagccaaaa 655
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagtgacaggaaca-gagtcctggaaagagaagcttcaaccttttgacaggaagccaaaa 307
Query: 656 ggctgttagacttcataggaattatttcta 685
||||||||||||||||||||||||||||||
Sbjct: 306 ggctgttagacttcataggaattatttcta 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space: 724950
Effective search space used: 724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_c19.g1 MSMg01no132_c19.g1 CHROMAT_FILE:
MSMg01no132_c19.g1 PHD_FILE: MSMg01no132_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:37 2005
(649 letters)
>mm_chr4_36112620_36113668
Length = 1049
Score = 1247 bits (645), Expect = 0.0
Identities = 648/649 (99%)
Strand = Plus / Plus
Query: 1 ccaggtgaaaacctttgtcattttcttatttagtgaaatgaacatgcaggacgaatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggtgaaaacctttgtcattttcttatttagtgaaatgaacatgcaggacgaatacat 260
Query: 61 taattttattacagggcagaactcaactcatccatccttttgtcctgagctcccatttgg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 taattttattacagggcagaactcaactcatccatccttttgtcctgaactcccatttgg 320
Query: 121 catacaaccactgctgtctcattcattagattaccagagctcaaatggcttttgattttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacaaccactgctgtctcattcattagattaccagagctcaaatggcttttgattttg 380
Query: 181 gcactgtagaacagttcccagacattcctactttattaaatcagaattattggcataggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactgtagaacagttcccagacattcctactttattaaatcagaattattggcataggg 440
Query: 241 tatgttttgaacataagctttctaagggactgatgacatgcgagttacagcttgccatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgttttgaacataagctttctaagggactgatgacatgcgagttacagcttgccatca 500
Query: 301 gacctggttactgcccactccttagacaaactgataaaagtctatttattctattcctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctggttactgcccactccttagacaaactgataaaagtctatttattctattcctta 560
Query: 361 aggtgtgctctaggatcataaaataagacaggtcaatcatgtgcttataggaaacaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgtgctctaggatcataaaataagacaggtcaatcatgtgcttataggaaacaaagg 620
Query: 421 agataacaatgtcaactgtgtaaatattggtttggaaatgatatggaaacagtcatcaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agataacaatgtcaactgtgtaaatattggtttggaaatgatatggaaacagtcatcaat 680
Query: 481 tagagatgagctggaaaatgctgcttttattattacattactcacccaaacactagcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagagatgagctggaaaatgctgcttttattattacattactcacccaaacactagcatt 740
Query: 541 ctcttccttcgctatgccagcgtattagaggattaggaggaagaacacaaactgattgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcttccttcgctatgccagcgtattagaggattaggaggaagaacacaaactgattgcc 800
Query: 601 aagaggatggatttgttgtgtaaactgtattttaaaagtataactgcaa 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagaggatggatttgttgtgtaaactgtattttaaaagtataactgcaa 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
