BAC Information

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BAC

Clone NameMSMg01-132H12
Chromosome4 (Build37)
Map Location 104,909,923 - 105,056,616
singlet/doubletdoublet
Overlap geneLOC433742
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b
Downstream geneLOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132H12.T7 (MSMg01no132_h12.b1)MSMg01-132H12.TJ (MSMg01no132_h12.g1)
ACCAG339704AG339705
length721693
length of high quality
(start - end)		318 (42 - 359)454 (71 - 524)
definitionCHROMAT_FILE: MSMg01no132_h12.b1 PHD_FILE: MSMg01no132_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:59 2005CHROMAT_FILE: MSMg01no132_h12.g1 PHD_FILE: MSMg01no132_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:59 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(104,909,923 - 104,910,235)(105,056,165 - 105,056,616)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGGTAGGAGATAGGGATTTTCTCTTTGGGCTTGCAGGAACAAGGACAC
CGTATTCTAGGAAAGAGAGCTAAGGAGCCCTCTTGGGTTTGGAGGAGCTC
AAGACAAAAGTAGAGTAGTAGCTCAATAGCCCGAGAGAAAGAGATTTCTA
GAGCAAGGACACTTTAGTTGTAGAGTCAGGCTTGTAAATAGATATTTTGT
ATATAGTTAAGAAAATAAAGTTACCTGACTGAGCTACCAGGTTTTTATCT
CAGTTCATGCCTCCCTTGTCTTTATTGATATAAATGTTAGATGATTTAAA
TGGCTACTTATGCTTCCAGTACTTTCCCTAGCAAGTTGTGAAATATGTGG
TCCAGGCAGTTCTCAGTCAAAAAGAATTGCTAGTGAAGGTGCCTGTTATG
TATTGGGGGGGAGGGGGGAGGTTTTTTTTTCCTATTTCCTCCTCTACACA
TCTTTTTTCTCCCCTTTCACCACCCCCTCCTCTTAATTCCCCTCCTCTCG
CTTCTAACCCCTTGCGTTCCTCTCCCCCTTTTCCCTTCCTCCCTTCCCCC
ATCTTGTAAATTCCTACACTTTTGTTCCATTGACAGTGTACCTTTTTCCG
ATTATTTCCCTTACTTTTTTATTTCTATATATTCCCCCCCTATCCCCTCT
TTTCCACTTTTCCCCGCCTGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGTGCATATTAAAAAGACATTCTGCTCC
GTATTCCTTCTATTTATAGGCAGAGTCCAACCACCAGAGGCCCAGCGTCT
GTCAGGGTCTCCCTGTCTTCTTCAGCTCACAGCCTCTCTCCTCCCTGCTC
TGGCTGCAGTGGGTGGTTATGGAGAGGTGAGGTGCTGAACTGGCCCTAAG
ACCTGTTTCCTGAGGAGGTGCGATTCCCAACCTGAGGGGCCAAACTTCAG
GACATTTCACAACTTCTGTGGGCTTTCATAGCCATGCTATAATTAACAAC
AGCATGGGTATGCAAAGGATTGGGACTTCATAGAAGGCTGAATAAAGTTA
GGGGGTCTCCAAAGTTGTTCTTACAGGGACTCTGACAATACACCAGACCA
TGCAATAGTCTAAGGCTGCTACCACCTGTCTCTTGCTCATTCACATGCAC
TAAATTTTAGATTATGCACAAAACCTAAAAATGAGCAGGTAGAAATAATA
ATAATAATAATAATAATAATAATAATAATAGCAATAACCAATTAGACAAT
TAGACTTGGTTTGTGTCTACAAAAAACTTACTGTGCAATAGAGAAATTAA
ATAGGCCGAGAAAGGATGTTGCTTGGGTATTAGAGAAATGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_h12.b1 MSMg01no132_h12.b1 CHROMAT_FILE:
MSMg01no132_h12.b1 PHD_FILE: MSMg01no132_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:59 2005
         (318 letters)



>mm_chr4_104909720_104910437
          Length = 718

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggtaggagatagggattttctctttgggcttgcaggaacaaggacaccgta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggtaggagatagggattttctctttgggcttgcaggaacaaggacaccgta 263

                                                                       
Query: 64  ttctaggaaagagagctaaggagccctcttgggtttggaggagctcaagacaaaagtaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctaggaaagagagctaaggagccctcttgggtttggaggagctcaagacaaaagtaga 323

                                                                       
Query: 124 gtagtagctcaatagcccgagagaaagagatttctagagcaaggacactttagttgtaga 183
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagtagctcaatagcctgagagaaagagatttctagagcaaggacactttagttgtaga 383

                                                                       
Query: 184 gtcaggcttgtaaatagatattttgtatatagttaagaaaataaagttacctgactgagc 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcaggcttataaatagatattttgtatatagttaagaaaataaagttacctgactgagc 443

                                                                       
Query: 244 taccaggtttttatctcagttcatgcctcccttgtctttattgatataaatgttagatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taccaggtttttatctcagttcatgcctcccttgtctttattgatataaatgttagatga 503

                        
Query: 304 tttaaatggctac 316
           |||||||||||||
Sbjct: 504 tttaaatggctac 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_h12.g1 MSMg01no132_h12.g1 CHROMAT_FILE:
MSMg01no132_h12.g1 PHD_FILE: MSMg01no132_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:59 2005
         (454 letters)



>mm_chr4_105055963_105056816
          Length = 854

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgtgcatattaaaaagacattctgctccgtattccttctatttataggcagagtccaacc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgtgcatattaaaaagacattctgctccgtattccttctatttataggcagagtccaacc 595

                                                                       
Query: 63  accagaggcccagcgtctgtcagggtctccctgtcttcttcagctcacagcctctctcct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 accagaggcccagcgtctgtcagggtctccctgtcttcttcagctcacagcctctctcct 535

                                                                       
Query: 123 ccctgctctggctgcagtgggtggttatggagaggtgaggtgctgaactggccctaagac 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 534 ccctgctctggctgcagtgggtggttatggagaggtgaggtgctgaaccggccctaagac 475

                                                                       
Query: 183 ctgtttcctgaggaggtgcgattcccaacctgaggggccaaacttcaggacatttcacaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctgtttcctgaggaggtgcgattcccaacctgaggggccaaacttcaggacatttcacaa 415

                                                                       
Query: 243 cttctgtgggctttcatagccatgctataattaacaacagcatgggtatgcaaaggattg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttctgtgggctttcatagccatgctataattaacaacagcatgggtatgcaaaggattg 355

                                                                       
Query: 303 ggacttcatagaaggctgaataaagttagggggtctccaaagttgttcttacagggactc 362
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 354 ggacttcatagaaggctgaataaagttagggggtctccaaagttcttcttacagggactc 295

                                                                       
Query: 363 tgacaatacaccagaccatgcaatagtctaaggctgctaccacctgtctcttgctcattc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 294 tgacaatacaccagaccatgcaatagtctaaggctgctaccacctgtctcttgttcattc 235

                                           
Query: 423 acatgcactaaattttagattatgcacaaaac 454
           ||||||||||||||||||||||||||||||||
Sbjct: 234 acatgcactaaattttagattatgcacaaaac 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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