Query= MSMg01no132_p03.b1 MSMg01no132_p03.b1 CHROMAT_FILE:
MSMg01no132_p03.b1 PHD_FILE: MSMg01no132_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:37 2005
(483 letters)
>mm_chr4_134285751_134286633
Length = 883
Score = 538 bits (278), Expect = e-157
Identities = 302/310 (97%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 171 ataacgtcaccccctttcccctctatccattttatcctctcctgtctcctgttagtgtgt 230
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 883 ataacgtcaccccctttcccctctatcctttttatcctctcctgtctcctgttagtgtgt 824
Query: 231 tgaaagggtggaagaaaaggtgtggagacaggtggaaagtggttctgggtctcacttctc 290
||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 823 tgaaagggtggaagagaaggggtagagacaggtggaaagtggttctgggtctcacttctc 764
Query: 291 accctgggctgtccaggtgcctgctgcacatggggtgggaaaggatagaggaaggacgga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 763 accctgggctgtccaggtgcctgctgcacatggggtgggaaaggatagaggaagg-cgga 705
Query: 351 accggtggatcagcaggacctcaggatgtcgatccagcttcgaggtcccttagaaggcat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 accggtggatcagcaggacctcaggatgtcgatccagcttcgaggtcccttagaaggcat 645
Query: 411 tcagtgaaacactgtgtgcataatagctccagggcccttagagacctcgggaagtgagac 470
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 644 tcagtgaaacactgtgtgcgtaatagctccagggcgcttagagacctcgggaagtgagaa 585
Query: 471 ggggtgtgtc 480
||||||||||
Sbjct: 584 ggggtgtgtc 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_p03.g1 MSMg01no132_p03.g1 CHROMAT_FILE:
MSMg01no132_p03.g1 PHD_FILE: MSMg01no132_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:37 2005
(291 letters)
>mm_chr4_134150589_134151279
Length = 691
Score = 228 bits (118), Expect = 2e-64
Identities = 136/142 (95%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 149 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgcgt 208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 194 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 253
Query: 209 aagaattcacagtggctggggtagcatgggtaagaattctcagtgggtggggtagcatgg 268
|||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 254 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 313
Query: 269 gtaagaactgcaca-gaacaag 289
|||||||||||||| |||||||
Sbjct: 314 gtaagaactgcacaagaacaag 335
Score = 223 bits (115), Expect = 1e-62
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 87 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 146
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 194 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 253
Query: 147 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgc 206
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 313
Query: 207 gtaagaa 213
|||||||
Sbjct: 314 gtaagaa 320
Score = 223 bits (115), Expect = 1e-62
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 118 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 194 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 253
Query: 178 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgg 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 313
Query: 238 gtaagaa 244
|||||||
Sbjct: 314 gtaagaa 320
Score = 215 bits (111), Expect = 3e-60
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 25 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 84
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 194 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 253
Query: 85 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgg 144
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 313
Query: 145 gtaagaa 151
|||||||
Sbjct: 314 gtaagaa 320
Score = 215 bits (111), Expect = 3e-60
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 56 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 115
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 194 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 253
Query: 116 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgg 175
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 313
Query: 176 gtaagaa 182
|||||||
Sbjct: 314 gtaagaa 320
Score = 201 bits (104), Expect = 3e-56
Identities = 116/120 (96%)
Strand = Plus / Plus
Query: 1 cagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggtaagaatt 60
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgtaagaatt 260
Query: 61 cacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggtaagaa 120
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgtaagaa 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
