Query= MSMg01no133_a12.b1 MSMg01no133_a12.b1 CHROMAT_FILE:
MSMg01no133_a12.b1 PHD_FILE: MSMg01no133_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:44 2005
(239 letters)
>mm_chr4_134509752_134510390
Length = 639
Score = 437 bits (226), Expect = e-127
Identities = 235/238 (98%)
Strand = Plus / Plus
Query: 1 gccattcaccatgggtgtccctttctctcagctttccccagttttcttgcccctgtgcca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gccattcaccatgggtgtccctttctctcagcttttcccagttttcttgcccctgtgcca 260
Query: 61 tgcagtgttcgagggtctttgtgttgtggttatggggaacttcaatctctgtaaaggaga 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tgcagtgttcgagggtctttgtgttgtggttacggggaacttcaatctctgtaaaggaga 320
Query: 121 cccagtggctttgttctttaatctccaggatgatgcaggaccgggctttggctcctgatc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cccagtggctttgttctttaatctccaggatgatgcaggaccaggctttggctcctgatc 380
Query: 181 tcaggcctgtctctcctcctaccccaagctgctcagcattttgagtctctgattcctt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggcctgtctctcctcctaccccaagctgctcagcattttgagtctctgattcctt 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_a12.g1 MSMg01no133_a12.g1 CHROMAT_FILE:
MSMg01no133_a12.g1 PHD_FILE: MSMg01no133_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:44 2005
(506 letters)
>mm_chr4_134634566_134635470
Length = 905
Score = 857 bits (443), Expect = 0.0
Identities = 493/525 (93%), Gaps = 28/525 (5%)
Strand = Plus / Minus
Query: 1 acttcccctggcaggtgcctgctcttctctgcact-cccactgctatcactaccatagaa 59
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 566 acttcccctggcaggtgcctgctcttctctgca-tgcccactgctatcactaccatagaa 508
Query: 60 gttcacacatttctgcccgggtccctgacccaaccgaaatgttttcagaatagaaaccag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gttcacacatttctgcccgggtccctgacccaaccgaaatgttttcagaatagaaaccag 448
Query: 120 ccctgcctccctcccgcccccaagtgtcccaagcacctaggcaaacacaatagctagcac 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 ccctgcctccctcccgcccccaagtgtcccaagcacctgggcaaacacaatagctagcac 388
Query: 180 ccaaggttgtaggctgagcaggtcccaccagaaaagtaaccagagggtggtctccaggga 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 387 ccaagattgtaggctgagcaggtcccaccagaaaagtaaccagagggtggtct-caggga 329
Query: 240 cattttctagaaacttctctgtcacaatacagacatccctgtggtcaccgtcaagggaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cattttctagaaacttctctgtcacaatacagacatccctgtggtcaccgtcaagggaat 269
Query: 300 cagtctactgactggtaaggattttaaggtgacagcaaagacccagaggagcttttcaga 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagtctgctgactggtaaggattttaaggtgacagcaaagacccagaggagcttttcaga 209
Query: 360 ggacct-------------gca------------tctagggactcagaggtgttgccaac 394
|||||| ||| |||| |||||||||||||||||||||
Sbjct: 208 ggacctgcttctctggacagcaggtaaccaccgttctatggactcagaggtgttgccaac 149
Query: 395 attatagccccagagcatcatgggaacatgggggaggggactctgggctctgctgtgctt 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 attatagccccagagcatcatgggaacatgggggaggggactctgggctctgctgtgctt 89
Query: 455 agccattggcaatggatagggctagtgtggccctgagaaaggcat 499
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 agccattggcaatggatagggctagtgtggccctgagaaaggcat 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space: 443920
Effective search space used: 443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
