Query= MSMg01no133_c17.b1 MSMg01no133_c17.b1 CHROMAT_FILE:
MSMg01no133_c17.b1 PHD_FILE: MSMg01no133_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:55 2005
(627 letters)
>mm_chr4_36705245_36706271
Length = 1027
Score = 1189 bits (615), Expect = 0.0
Identities = 624/627 (99%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 1 agatttcggtgatcattacttcacaaagtcctggattgctatactttaaacttacatagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agatttcggtgatcattacttcacaaagtcctggattgctatactttaaacttagatagg 260
Query: 61 aagtagaaaaaatgtctctctgggatacagagttgcccttatgtacatagatgaatacac 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aagtagaaaaaatgtctctctgggatacagagttgctcttatgtacatagatgaatacac 320
Query: 121 agaactttatatgtcaggcactcaataatggtttgaaagttaagattcatttcctatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaactttatatgtcaggcactcaataatggtttgaaagttaagattcatttcctatatg 380
Query: 181 taaatattaatattctactctaagacaatgactaaaaattgtccttagtagaagagaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatattaatattctactctaagacaatgactaaaaattgtccttagtagaagagaata 440
Query: 241 ataaattatataggacaagctggtgagtgtttgtcatttattcctttcaacattgcatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaattatataggacaagctggtgagtgtttgtcatttattcctttcaacattgcatgg 500
Query: 301 gattcttactcccttcatttcacagatataaaaaaactcaggccaatttgccattattaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattcttactcccttcatttcacagatataaaaaaactcaggccaatttgccattattaa 560
Query: 361 gttacacattttctcatgattatttaatttttttaatttgaatataagtagcagagtcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttacacattttctcatgattatttaatttttttaatttgaatataagtagcagagtcca 620
Query: 421 catatagagttagacatacattaaagggatatgttatttttttatattcacatgtgtgca 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 catatagagttagacatacattaaagggatatgttatttttt-atattcacatgtgtgca 679
Query: 481 ttatgtctgtgtgtcaacatgtttgtacatatgtgtgtatgcataagtgagtgcataagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttatgtctgtgtgtcaacatgtttgtacatatgtgtgtatgcataagtgagtgcataagt 739
Query: 541 gtaagtgtatgcttgtgtgttttgctgagactttgtacacactaagctacagttacagca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtaagtgtatgcttgtgtgttttgctgagactttgtacacactaagctacagttacagca 799
Query: 601 ctgggctataacccccactcttgaata 627
|||||||||||||||||||||||||||
Sbjct: 800 ctgggctataacccccactcttgaata 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_c17.g1 MSMg01no133_c17.g1 CHROMAT_FILE:
MSMg01no133_c17.g1 PHD_FILE: MSMg01no133_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:55 2005
(626 letters)
>mm_chr4_36801452_36802477
Length = 1026
Score = 1096 bits (567), Expect = 0.0
Identities = 585/591 (98%)
Strand = Plus / Minus
Query: 1 tttatttaggtctgtaccccacttaaatagggttatttggttctatcctatgcatttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttatttaggtctgtaccccacttaaatagggttatttggttctatcctatgcatttcta 532
Query: 61 aatgccaaatttacataacttctgtaggttattattaatacatacagataaatagaaatt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aatgccaaatttacataacttatgtaggttattattaatacatacagataaatagaaatt 472
Query: 121 cttgtgaatgaaaatatggtgtagggattataagcaagtaaagtttattacaaggttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cttgtgaatgaaaatatggtgtagggattataagcaagtaaagtttattacaaggttttc 412
Query: 181 tgctgttgaataggaaacattgtttaattaaaagctgattagtgtttgtagtatgcctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgctgttgaataggaaacattgtttaattaaaagctgattagtgtttgtagtatgcctca 352
Query: 241 attatagggatatatttgtaatgtttatagtactaatatgtctgcttatatatgtttaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attatagggatatatttgtaatgtttatagtactaatatgtctgcttatatatgtttaag 292
Query: 301 cttttccatgatcagttcctattatcatttctttgtctgtgcttttgcagagatttttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttttccatgatcagttcctattatcatttctttgtctgtgcttttgcagagatttttaa 232
Query: 361 ggaaaatatatgtgaatccagataccagtatggaaaatctaactgaaaaagatatctttt 420
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 231 ggaaaatatatgtgaatccagataccagtatggaaaatctaaccgaaaaaaatatctttc 172
Query: 421 acactagttgaaatggctattttgaatatacaaggatatgaattttcagtgttattgagg 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acactagttgaaatggctactttgaatatacaaggatatgaattttcagtgttattgagg 112
Query: 481 atatagaattagaacacctgcatcctatgagcagtactgcaaattggaagagtctctatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 atatagaattagaacacctgcatcctatgagcagtactgcaaattggaagagtctctatt 52
Query: 541 tgaacaatatgcaaaagtcccttaaaagatgtaaaacaaaactaatccatc 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tgaacaatatgcaaaagtcccttaaaagatgtaaaacaaaactaatccatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
